Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1060g00017 ATGAAGTTGGCGATTCGACTTCTTCAATCATCTATATATTTTTTTGCATGCAAAACAAAAATCAAGGTAACATATATCATAAACATAACATATACTATATATTACATGTGTTTGTTTAAGGTGGCGAATCCAAGAGATAATAAAGTTATTAAAAGGGAACTCAATGATCCCACATTGTCGTCAAGTGAAATGGTATTTCCTTTTCCTGGGATGAATAGAGATAGAGAAATGTCTGCAATGATCTCTGCTTTGACTCATATTGTTTCTGGAGATGTTCCAAATCAAAGCACTGCAGTTGAACTCGAACCAAATATCAACATGTCTACTTCTACTAATTCTTCATCGAGTTATGGTACTAGTTCTTCTCTCAAAAGAACTAGGGAAGATGATAGATACGTCGGCGATCAATCGACACAGACACCAGACACAACACTCGTTCTACCAACAAATACAGAAAGTTCGCGGAATAGGACAGCGACATCGACAACAAGAGTGACAAGAGAAATGGGAAATGCTGTGTATGAATATAGGAGAACAGAGAATGTGGTAAGAGAAGGAGAAGAGAAGAGAAAGTACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCGGAGATAAGAGATCCATTCAAAGCCGCAAGAGTATGGTTAGGAACATTTGAAACCGCTGAAGCAGCAGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCAAAACTGAATTTTCCTGAGAATGTTACTCTTCGTCATCCTCCTCCAACAACGCCGAATCAATGGAATATTTCGAATATGCCGAGTTCGGTTGTTTCTATTACAACTTCTACGGACCCGGTTGTTCATACTCGACCTTTTCTTTCTTCTTCTTCTTCTCAGCCTTCAACGAACTTTTATGATCCTTTTCAGTTTTCGGGTATTCTTGGTAGGAATGTTTATGATGATAATGTGGTTATGAGTTCTACTATGGCTTCTCATCTTCAATCTTCTTCGTCGTCGTTGTCACCAGCTTCTTCTTTGTCATCTTCCTCTTCTGCATTTCCTTCTTCTATGCAGACCAATGCTTCAGCTTCCTCGTTTTATTCTACACAGTTTCCACCGTGGTCTGCCTCCGATCATAACTCTTCTTCCTCCAGATGA 1149 0.396 MKLAIRLLQSSIYFFACKTKIKVTYIINITYTIYYMCLFKVANPRDNKVIKRELNDPTLSSSEMVFPFPGMNRDREMSAMISALTHIVSGDVPNQSTAVELEPNINMSTSTNSSSSYGTSSSLKRTREDDRYVGDQSTQTPDTTLVLPTNTESSRNRTATSTTRVTREMGNAVYEYRRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPPTTPNQWNISNMPSSVVSITTSTDPVVHTRPFLSSSSSQPSTNFYDPFQFSGILGRNVYDDNVVMSSTMASHLQSSSSSLSPASSLSSSSSAFPSSMQTNASASSFYSTQFPPWSASDHNSSSSR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1060g00017 382 MobiDBLite consensus disorder prediction 105 163 - -
Vivi1060g00017 382 SUPERFAMILY DNA-binding domain 191 249 IPR016177 GO:0003677
Vivi1060g00017 382 PRINTS Ethylene responsive element binding protein signature 214 230 IPR001471 GO:0003700|GO:0006355
Vivi1060g00017 382 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Vivi1060g00017 382 FunFam Ethylene-responsive transcription factor 2 190 249 - -
Vivi1060g00017 382 CDD AP2 191 250 IPR001471 GO:0003700|GO:0006355
Vivi1060g00017 382 Pfam AP2 domain 191 240 IPR001471 GO:0003700|GO:0006355
Vivi1060g00017 382 ProSiteProfiles AP2/ERF domain profile. 191 248 IPR001471 GO:0003700|GO:0006355
Vivi1060g00017 382 Gene3D AP2/ERF domain 190 250 IPR036955 GO:0003700|GO:0006355
Vivi1060g00017 382 MobiDBLite consensus disorder prediction 136 163 - -
Vivi1060g00017 382 SMART rav1_2 191 254 IPR001471 GO:0003700|GO:0006355
Vivi1060g00017 382 MobiDBLite consensus disorder prediction 105 122 - -
Vivi1060g00017 382 PANTHER DNA-BINDING DOMAIN 126 348 IPR044808 GO:0003700|GO:0009873
Vivi1060g00017 382 MobiDBLite consensus disorder prediction 331 355 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1060g00017 189 253 AP2-EREBP Transcription Factor Family AT5G61890 84.615 5.36e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1060g00017 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1060g00017 - - vvo:131639362 627.476