Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1060g00013 ATGAAGCAGAAAGACAAAGCGAAAGTCAAATTTTCCCGCAAGTGTGTCAATTGTTCTAGTTCTGTTAGGAAATCCACTGCAGAAACAATGGCTGTGAAAGAGGAATGCTGGACCCGAGTCGTTGAAAATCCTGTTAAGCTGAGAAACAATGTGTTGGGTATTCCAAGAGATGTGATTCGTGCATGTATATCCGGGAAGATTCCAAGAATTGTCTTGATTGATCGCAACACTGGCGTTCCGTACTACTGCGAGATGGTAAAGAGGGCAGGTACTATAGATAGGTATATATTCGGTGGATGGTCTGACTTTTGTAAAGAGCGCAACCTACAGAAGGGAGACACATTGCGGTTCTCCATTAAATATCCTCCGGTGGACTCGATATTGGTGACCGTAGAGCGTGGAAGAGCCTAG 411 0.4453 MKQKDKAKVKFSRKCVNCSSSVRKSTAETMAVKEECWTRVVENPVKLRNNVLGIPRDVIRACISGKIPRIVLIDRNTGVPYYCEMVKRAGTIDRYIFGGWSDFCKERNLQKGDTLRFSIKYPPVDSILVTVERGRA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1060g00013 136 ProSiteProfiles B3 DNA-binding domain profile. 37 135 IPR003340 GO:0003677
Vivi1060g00013 136 SUPERFAMILY DNA-binding pseudobarrel domain 48 119 IPR015300 -
Vivi1060g00013 136 CDD B3_DNA 52 117 IPR003340 GO:0003677
Vivi1060g00013 136 SMART B3_2 44 135 IPR003340 GO:0003677
Vivi1060g00013 136 Gene3D - 3 133 IPR015300 -
Vivi1060g00013 136 Pfam B3 DNA binding domain 45 118 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1060g00013 22 120 REM Transcription Factor Family AT4G31650 28.431 6.98e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1060g00013 B3 9.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1060g00013 - K11265 vvo:131639365 280.026