Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1060g00009 | ATGGATTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAGGAGGAGCTAGAAGAGAAAGATTCTTCTAAGAAGGGGAGGGAGAGTAGCGACAGGACCGAACGGAGCTACAGAAAGCGCGATGAGATCGAAGAGGGCGCTGAATTGAAGAGGAGCAAGAGGTCCAGTGGCGAAGACGATGAACATGTCTCCAGGAAGGATAGGGATCGGGATGATGACCGCGACAAGGAGCGTCGTAGGAGTGGCAGGGATAGGGATAGAGACAGAGATAGAGACGGTGAGAGGAGTAGCAGAGACAGAGACCGAGGCCGAGACAGGGAGAAGGATGGGGACAGGGAGAAAGATAGGAGAGACAAGGATAGAGATAGGGAAAGGAGGGAGAGGGAGAGGGAGAAGGAGAAGGAAAAGGAGAGAGAAAGGTCCCGGAGAAGCAAGAGTCGTTCCGAGCGAGAAAGAGAGATAGAACGGGAGGAGAGGGAGAGGTCTCGGAGAAGCGGAAGTCGTTCTGAACGAGATAGAGAGAAGGAACGGGAGGAGAGAGACAGGTCCCGGAGGAGCAGAAGTCGTTCTGAGCGTGATAGTGTTAGAGAACGGGATTTTGACATGAGAGATAGCAGGAGACTTAGGGAGAAGAAGGAAGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTACGACGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCAAATACTACTACTGGAGCTGCTGGTGTGGTCGGACCATATGGAGCCGTGGACAGAAAACTGTATGTGGGGAACCTTCATTTCAATATGACTGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGATTTATTCAATTTGCCCACCTAGAGCATGCCAAAGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAGGCCAAGATACAACAGCAAAATCTGCAGATTTTGATGATGATGAAGGCGGATTGGCTTTAAATGCACAATCAAGAGCATTGCTTATGCAGAAGTTGGATCGCTCTGGAATCGCTGCAAGCATTGGCTTACCCATGAATGGCTCAGTTCCTGCCCAGCAGGCTATTAGTTTGCCTATTGGTAATCCTGGATTAATACCAGCACTAGCTCTTCCAACTCAATTTATGCCTACCCAAGTGGCCGAACCTGTCGGAACCCCCAGCAACTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTCGACAAGAATAGTGCAGGTTTTGTATATTTGATGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAGCGTGCGATGCACATGCGGTGGTTTGCACGCAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCTAAGTTTAAAGGGGTTGTGTGA | 1776 | 0.4724 | MDFDEYDYLEKTVEEELEEKDSSKKGRESSDRTERSYRKRDEIEEGAELKRSKRSSGEDDEHVSRKDRDRDDDRDKERRRSGRDRDRDRDRDGERSSRDRDRGRDREKDGDREKDRRDKDRDRERREREREKEKEKERERSRRSKSRSEREREIEREERERSRRSGSRSERDREKEREERDRSRRSRSRSERDSVRERDFDMRDSRRLREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPMNGSVPAQQAISLPIGNPGLIPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGVV | 591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1060g00009 | 591 | CDD | RRM3_RBM39_like | 496 | 578 | - | - | |
| Vivi1060g00009 | 591 | MobiDBLite | consensus disorder prediction | 13 | 224 | - | - | |
| Vivi1060g00009 | 591 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 421 | 515 | IPR029123 | - | |
| Vivi1060g00009 | 591 | MobiDBLite | consensus disorder prediction | 1 | 224 | - | - | |
| Vivi1060g00009 | 591 | Gene3D | - | 492 | 590 | IPR012677 | - | |
| Vivi1060g00009 | 591 | FunFam | Splicing factor, CC1-like protein | 492 | 590 | - | - | |
| Vivi1060g00009 | 591 | FunFam | Splicing factor CC1-like | 312 | 417 | - | - | |
| Vivi1060g00009 | 591 | NCBIfam | splicing factor, CC1-like family | 113 | 587 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Vivi1060g00009 | 591 | Gene3D | - | 156 | 313 | IPR012677 | - | |
| Vivi1060g00009 | 591 | FunFam | Splicing factor CC1-like | 156 | 311 | - | - | |
| Vivi1060g00009 | 591 | Coils | Coil | 116 | 151 | - | - | |
| Vivi1060g00009 | 591 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 328 | 406 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | SMART | rrm1_1 | 227 | 299 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | SMART | rrm1_1 | 498 | 575 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | SMART | rrm1_1 | 329 | 402 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | SUPERFAMILY | RNA-binding domain, RBD | 328 | 580 | IPR035979 | GO:0003676 | |
| Vivi1060g00009 | 591 | Gene3D | - | 324 | 419 | IPR012677 | - | |
| Vivi1060g00009 | 591 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 226 | 303 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | CDD | RRM1_RBM39_like | 227 | 299 | - | - | |
| Vivi1060g00009 | 591 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 151 | 587 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Vivi1060g00009 | 591 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 520 | 571 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 233 | 295 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 330 | 400 | IPR000504 | GO:0003723 | |
| Vivi1060g00009 | 591 | SUPERFAMILY | RNA-binding domain, RBD | 219 | 306 | IPR035979 | GO:0003676 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1060g00009 | 327 | 401 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 39.474 | 6.48e-08 | 53.5 |