Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1056g00001 ATGTGTGGTGGTGCTATTATCTCCGACTTCATCCCAGCTACGGCGGCGGTGGGTGGTTCCCGCCGTGTGACTGCTGATATCCTGTGGCCGAATTTGAGGAAAAATGGTTTGAAGAAACCGTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTTAAGGATGATTCTGATTTTGATGAGGACGAGGATGACGAGGAAGATGAAGGGTTGATGCTCGGTGTCAAAGGTTTTGGTTTTGCTGCTGGCAACAACAAATCTTCAAGGACCTTCTCTCGTGGATCGAGTGCTGCAAAACCTGTGGCGCCGAAATCAAATGAGCCAGCTGAAAAGGCTACGAAGAGGAAGAGGAAGAATCAGTATAGGGGTATCCGACAGCGTCCTTGGGGAAAGTGGGCTGCTGAGATTCGTGACCCGAGGAAAGGAGTTCGTGTTTGGCTCGGAACATTCAGCACTGCTGAGGAAGCTGCGAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCGCAAAAGCCAAGGTGAATTTCCCTGAAGAGAATCCTAATGCTTCCACAAAACGTGTTAAGGCGAGTCCTGAGACGCAGGTGGTGAATAAGAATCTGAACTCGTTCAAACCGAATGGGAACACAATGTTCAACTTCGGCGAGAATATGGAGAACTTCTATTCCCCTATGGATCAGGTTGAACAGAAGCCGATGGTTAACAACCAGTTTGCTAACGCGGGAGCGTTCGTGGGAAATGGATTTCAGTTTGCTGCTGCTGATGCTAATGCTTACTTCAGCTCTGAACACTCGAGCAATTCGTTCGATTATTCTGATCTAGGTTGGGGCGAACAAGGCCCGAAAACCCCCGAGATTTCGTCTGTGTTTTCCGCTCCTGCTCCTCAGCAAGGCGAAGCTCAGTTCAATCTGCAGCAGTCTAACAATGCTCAGGATATGCTGCCTATGCAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTCGCAGACATCGAATCTCAGCTGAAGTTCTTTGAGAACTCATTTGATGATAACTGGAGTGATGCATCATTGGCGTCATTGCTCGGTACTGATTCAGTTCAGGATTGTGGAAACACAATGAACCTCTGGAGCTTTGATGACATGCCCGCCATCTCCGGCGGAGTTTTCTGA 1155 0.4866 MCGGAIISDFIPATAAVGGSRRVTADILWPNLRKNGLKKPFLLDDDFEAGFREFKDDSDFDEDEDDEEDEGLMLGVKGFGFAAGNNKSSRTFSRGSSAAKPVAPKSNEPAEKATKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGAKAKVNFPEENPNASTKRVKASPETQVVNKNLNSFKPNGNTMFNFGENMENFYSPMDQVEQKPMVNNQFANAGAFVGNGFQFAAADANAYFSSEHSSNSFDYSDLGWGEQGPKTPEISSVFSAPAPQQGEAQFNLQQSNNAQDMLPMQDDSAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGTDSVQDCGNTMNLWSFDDMPAISGGVF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1056g00001 384 Coils Coil 322 342 - -
Vivi1056g00001 384 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Vivi1056g00001 384 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Vivi1056g00001 384 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Vivi1056g00001 384 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Vivi1056g00001 384 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Vivi1056g00001 384 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Vivi1056g00001 384 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Vivi1056g00001 384 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Vivi1056g00001 384 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Vivi1056g00001 384 MobiDBLite consensus disorder prediction 88 124 - -
Vivi1056g00001 384 PANTHER DNA-BINDING DOMAIN 93 297 IPR044808 GO:0003700|GO:0009873
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1056g00001 1 384 AP2-EREBP Transcription Factor Family AT3G14230 43.276 1.98e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1056g00001 AP2 3.3e-12 CL0081