Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1055g00006 ATGGGTAGGGGGAAGATTGAGATTAAAAGAATTGAAAATTCTAATAGCAGACAAGTTACATTTTCAAAGAGGAGAACTGGCTTGTTGAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCCGAGGTTGCTGTTATCATTTTTTCTAACACAGGGAAGCTTTTTGAGTTTTCTAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCACAGATTCTTCTGAGAGTGGATCAGTGGAATATAAAGCAGAGTGTTTTGTTCAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAGTTGCCAAACTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAGCAGGATTGGGATTAAAGGAACTGCAACTTCTAGAGCAGCAAATTAACGAAGCATTATTATCCGTGAAGGAGAAGAAGGAAGAATTACTTATGGAGCAACTGGAGCAGTCAAGGATACAGGAACAGAAGGCTATGCTGGAGAATGAAACTTTGCGCAGACAGGTTGAAGAGCTTCGTTGCTTGTTTCCAATGACAGAACATGTGATTCCAAATTATCTTCAGTATCACCATATGGAAAGAAATAATTCATTTGTAGATAATGGTGTTAAATGTCCCAGCTTGGCGAGAAGCTGCTCAAATGACAAAGGAGATTCAGACACCACATTGCATTTAGGGTTACCAAGTGATGTTCATCACAAGAGGAAGACTCCTGAGAAAAAAACCTTTTCTGATGATTCATAG 759 0.39 MGRGKIEIKRIENSNSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESGSVEYKAECFVQKEDSKMVEILKDEVAKLETNQLRLLGKDLAGLGLKELQLLEQQINEALLSVKEKKEELLMEQLEQSRIQEQKAMLENETLRRQVEELRCLFPMTEHVIPNYLQYHHMERNNSFVDNGVKCPSLARSCSNDKGDSDTTLHLGLPSDVHHKRKTPEKKTFSDDS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1055g00006 252 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1055g00006 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 MobiDBLite consensus disorder prediction 232 252 - -
Vivi1055g00006 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi1055g00006 252 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vivi1055g00006 252 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1055g00006 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Vivi1055g00006 252 Coils Coil 127 147 - -
Vivi1055g00006 252 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vivi1055g00006 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1055g00006 252 MobiDBLite consensus disorder prediction 217 252 - -
Vivi1055g00006 252 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vivi1055g00006 252 Coils Coil 153 180 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1055g00006 1 252 MADS-box Gene Family AT5G13790 55.336 8.84e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1055g00006 K-box 7.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1055g00006 - - rcu:8259342 323.553