Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1055g00005 ATGGGTAGGGGGAAGATTGAGATTAAAAGAATTGAAAATTCTAATAGCAGACAAGTTACATTTTCAAAGAGGAGAACTGGCTTGTTGAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCCGAGGTTGCTGTTATCATTTTTTCTAACACAGGGAAGCTTTTTGAGTTTTCTAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCACAGATTCTTCTGAGAGTGGATCAGTGGAATATAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAGTTGCCAAACTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAGCAGGATTGGGATTAAAGGAACTGCAACTTCTAGAGCAGCAAATTAACGAAGCATTATTATCCGTGAAGGAGAAGAAGGAAGAATTACTTATGGAGCAACTGGAGCAGTCAAGGATACAGGAACAGAAGGCTATGCTGGAGAATGAAACTTTGCGCAGACAGGTTGAAGAGCTTCGTTGCTTGTTTCCAATGACAGAACATGTGATTCCAAATTATCTTCAGTATCACCATATGGAAAGAAATAATTCATTTGTAGATAATGGTGTTAAATGTCCCAGCTTGGCGAGAAGCTGCTCAAATGACAAAGGAGATTCAGACACCACATTGCATTTAGGGTTACCAAGTGATGTTCATCACAAGAGGAAGACTCCTGAGAAAAAAACCTTTTCTGATGATTCATAG 747 0.3909 MGRGKIEIKRIENSNSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESGSVEYKAEKEDSKMVEILKDEVAKLETNQLRLLGKDLAGLGLKELQLLEQQINEALLSVKEKKEELLMEQLEQSRIQEQKAMLENETLRRQVEELRCLFPMTEHVIPNYLQYHHMERNNSFVDNGVKCPSLARSCSNDKGDSDTTLHLGLPSDVHHKRKTPEKKTFSDDS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1055g00005 248 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1055g00005 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vivi1055g00005 248 MobiDBLite consensus disorder prediction 228 248 - -
Vivi1055g00005 248 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Vivi1055g00005 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi1055g00005 248 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vivi1055g00005 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 Coils Coil 123 143 - -
Vivi1055g00005 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1055g00005 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vivi1055g00005 248 MobiDBLite consensus disorder prediction 213 248 - -
Vivi1055g00005 248 Coils Coil 149 176 - -
Vivi1055g00005 248 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1055g00005 1 248 MADS-box Gene Family AT5G13790 55.777 4.19e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1055g00005 K-box 6.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1055g00005 - - rcu:8259342 329.331