LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1052g00009	ATGGAGGAGGATCATGGAAAGGCAATGGAGGAGATTTTGAGAGGGTGTGAGTTTGCCAACCACCTCCAACAATTACTGCTAAACAATAATAGTAATGATTTTACAGAAACAACTTCATTTGTTCAATATCTTGTCAACAATATCATCAATTCATTTAGCAATGTTCTCTTTCTCTTGGACAAACATGATTTTTCCTGCAATTCCATTGCTCCCGTAATAAGACCTGTCGCCGAATTGGAAGAAAGTCGCAAGACTACTTCTTCTGCTACCAGAGCTCCTTACAAAAGAAGAAACACTACACGAGAGAAGGTGACAGAAACTCCCTTAGATGATGATGGTCATCAATGGAGAAAGTATGGCCAGAAAAAGATCAACAATTCTCAATACTCAAGGAACTACTACAGGTGTACTCACAAGTATGATCAAAGATGTCTAACAACAAAACAGGTGGAGAGAATTCAACAAAAACCTCCCTTATATAAAACCACCTATTATGGCCACCACACTTGTGGAAACTTGCCCAACCCTCACATCATACATGACCCTAGTGACACTAATTCCTCCGTATTACTTAGCTTCAACAACACATTCCCAGTTCCAACAAAACAAGACTGTCCCTTTTTATCATCATCATCATCTCCTTCCTCGCATGATTTTGTGAATAAAGACATACTTTTAGATGACAATAATAGCATGCTCTTCACTGATACAGCTTTTGATAACTCTAACTCTACAAGTCATGTTCCTAATCTATCATCAATACTTGAAACTGATCACGAGAATATGATAAAGTATGGTTTCATGTATCATTTTGGGGATTTTGATGATGATTTCTCTACAAGTCATGTTCCTACTCTACTATCAACATTTGAAAATGATCACAAAAATATGATGCAGTGTGGTTTCTTGTATGATTTTGGGGAGTTTGATGATGATTTATTTCTCCCTTTTGATGGGTTTTGA	963	0.3707	MEEDHGKAMEEILRGCEFANHLQQLLLNNNSNDFTETTSFVQYLVNNIINSFSNVLFLLDKHDFSCNSIAPVIRPVAELEESRKTTSSATRAPYKRRNTTREKVTETPLDDDGHQWRKYGQKKINNSQYSRNYYRCTHKYDQRCLTTKQVERIQQKPPLYKTTYYGHHTCGNLPNPHIIHDPSDTNSSVLLSFNNTFPVPTKQDCPFLSSSSSPSSHDFVNKDILLDDNNSMLFTDTAFDNSNSTSHVPNLSSILETDHENMIKYGFMYHFGDFDDDFSTSHVPTLLSTFENDHKNMMQCGFLYDFGEFDDDLFLPFDGF	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1052g00009	320	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	10	186	IPR044810	GO:0003700
	Vivi1052g00009	320	SUPERFAMILY	WRKY DNA-binding domain	105	171	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1052g00009	320	MobiDBLite	consensus disorder prediction	95	116	-	-
	Vivi1052g00009	320	SMART	WRKY_cls	110	172	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1052g00009	320	Pfam	WRKY DNA -binding domain	111	170	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1052g00009	320	MobiDBLite	consensus disorder prediction	81	116	-	-
	Vivi1052g00009	320	Gene3D	WRKY domain	95	174	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1052g00009	320	ProSiteProfiles	WRKY domain profile.	105	168	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1052g00009	4	200	WRKY Transcription Factor Family	AT1G66550	35.961	2.61e-28	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi1052g00009		WRKY	5.5e-22	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1052g00009	-		-	vvo:131639289	612.068