Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1052g00006 ATGGTGGAAGATAGTACAGTTTCTGTTACAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTCGTTCCTATTGCTCTTACTAAAGCAAAAGAGGTAAAAGGGTTTCTAGGTAGATGGAAAATGATCATTTCGAAGTTGGAACAAGTTCCGTCGAAGCTATCGGATTTATCTAGCCACCCTTGTTTCTCAAAGAATGCTCTTTGCAAGGAACAGTTGCAGGCTGTGTCGAAGACGTTACGAGAAGCTATTGAGTTAGCTGAGTTGTGTTTGAAGGAAAAGTATGAAGGTAAGCTAAGGATGCAGAGTGATCTCGACGCGTTGATTGGTAAACTTGATTTGAATTTGAAGGATTGTAGTTTGTTGACAAAAAGTGGTGTACTTGGTGAAGCTACTTTGCAGTTCAATGTTTCTGGTATTATAGCGGAATCGGATATTGAAACACATGGAAATATAAAGGAATTACTTGCGCGCCTTCAAATCGGTCATTTGGAATCGAAACACAAGGCTTTGGATAGATTACATGAGCTTATGAAAGATGATGAGAAGAATGTTTTGGCTGTTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAGTTGCTTACTGCAACATCGCCGAGGATTAGGGAGAAAACAGTTAGTATTATATGCTCGATTGTGGAATCGGGCAGTAGCTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCTCTTATAAGGCTTGTTGAATCAGGTAGTGCTGTTGGTAAAGAAAAGGCTATTGTATCTCTTCAAAGGCTATCGATGTCGGAAGAAACAGCTCGCGCGATCGTCGGACACGGAGGGGTTCGTCCGTTAATCGAGCTTTGTCAGGTTGGCGATTCTGTCTCACAGGCGGCGGCAGCTTGTACTTTGAAGAGTATTTCGGCTGTTCCGGAAGTGAGACAGGTTTTAGCCGAAGAAGGTGTTGTTCGGGTTATGATCAATCTCCTCAACAACGGAATGCTGTTAGGTACGAAGGAGTATGCTGCTGAATGTTTGCAGAATCTCACTGCAAGCAACGAGAATCTGCGAAGGTCTGTTATATCAGAAAACGGCATCCGAAGCCTTTTGGCTTTTCTCGATGCTCCAGTTCCTCAAGAATCCGCTGTAGGTGCATTGAAGAATCTCGTCGGATTGGTTCCCGAAGAAACTTTGGTTTCTCTCGGGGTTCTCTCTTGTCTGGTGCATGTTTTGCAGTCAGGATCATTAGGCGCGAAACAAAACGCGGCTTCGGTTATATGTCGGATTTGTAGCTCGATGGAGATGAAGAAAATGTTGGGTGAAGTTGGTTGCATACCTCTATTAATCAACATGCTCGAGGCGAAAGCAAACACTGCTAGAGAACTTGCGGCGCAAGCAATTGCGAGTTTGATGATCCTGTCGCAGAATCGGAGAGAAGTTAAAAAGGATGATAAAAGCGTGCCGAATTTGGTACAGTTGCTTGATCCTAGTCCACAGAATACTGCAAAAAAGTATGCAGTTTGTTGTCTTGGATCACTTTCTTCATGTAAGAAGTGTAAGAAGTTGATGATTTCTTATGGAGCAATAGGGTATTTGAAGAAGCTTATTGAGATGGAGATTCCAGGAGCTAAGAAGTTGCTTGAGAGATTGGAAAGAGGGAAACTGAGAAGCTTGTTTAGCAGAAAATAA 1686 0.4265 MVEDSTVSVTVDTCSTEEWLLNSQELVPIALTKAKEVKGFLGRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKSGVLGEATLQFNVSGIIAESDIETHGNIKELLARLQIGHLESKHKALDRLHELMKDDEKNVLAVFCRSNVAALVQLLTATSPRIREKTVSIICSIVESGSSCENWLVSEGVLPPLIRLVESGSAVGKEKAIVSLQRLSMSEETARAIVGHGGVRPLIELCQVGDSVSQAAAACTLKSISAVPEVRQVLAEEGVVRVMINLLNNGMLLGTKEYAAECLQNLTASNENLRRSVISENGIRSLLAFLDAPVPQESAVGALKNLVGLVPEETLVSLGVLSCLVHVLQSGSLGAKQNAASVICRICSSMEMKKMLGEVGCIPLLINMLEAKANTARELAAQAIASLMILSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1052g00006 561 Gene3D - 147 334 IPR011989 -
Vivi1052g00006 561 SUPERFAMILY ARM repeat 153 540 IPR016024 -
Vivi1052g00006 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 364 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 184 225 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 431 471 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 351 390 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 393 430 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 268 308 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 309 350 IPR000225 GO:0005515
Vivi1052g00006 561 SMART arm_5 472 514 IPR000225 GO:0005515
Vivi1052g00006 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 559 - -
Vivi1052g00006 561 Gene3D - 335 549 IPR011989 -
Vivi1052g00006 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1052g00006 338 537 U-box Gene Family AT3G54790 28.431 4.51e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1052g00006 - - gmx:100809488 874.774