Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1052g00003 ATGGAAGACGAACGTGATGCCGAGTATGCAATTAGACGGCTTGATCAAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGTGTGGAATGGACTAAGCAAGAGCGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAAAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACTAAAGCTTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTCATCACAGTGGAGTATGCTATAAGAGATGATGATGTCAAAAAAGATGGATACAGTCCTGATAGAAGAGGTCGCGGCTCCCCTGATGGGAGGTATGGTCGTGGCAGATCTCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTAGAGCCAGGGATAGCCCTGATTATGGTCGTGGATCAAATCCAGGTTCCAGACCAGAACCAAGAGGAAGCCCCAGGTATGAACGAGCTGAAAGCCCAATTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGGATCAAATCAATCTTCCAGACCAGAACCTAGAGGAAGCCCCAAGCTGGAACGTCCCGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCACGTGATAGGTCAAGATCCTGA 762 0.4606 MEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRARDSPDYGRGSNPGSRPEPRGSPRYERAESPINGRYDSRSPPPRGSNQSSRPEPRGSPKLERPESPMNGRYDSRSPPPRDRSRS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1052g00003 253 SUPERFAMILY RNA-binding domain, RBD 48 150 IPR035979 GO:0003676
Vivi1052g00003 253 FunFam Serine/arginine-rich splicing factor RS31 47 137 - -
Vivi1052g00003 253 MobiDBLite consensus disorder prediction 130 253 - -
Vivi1052g00003 253 MobiDBLite consensus disorder prediction 130 147 - -
Vivi1052g00003 253 Gene3D - 1 46 IPR012677 -
Vivi1052g00003 253 MobiDBLite consensus disorder prediction 209 223 - -
Vivi1052g00003 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 119 IPR000504 GO:0003723
Vivi1052g00003 253 Gene3D - 47 135 IPR012677 -
Vivi1052g00003 253 SUPERFAMILY RNA-binding domain, RBD 1 44 IPR035979 GO:0003676
Vivi1052g00003 253 MobiDBLite consensus disorder prediction 30 45 - -
Vivi1052g00003 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 126 IPR000504 GO:0003723
Vivi1052g00003 253 MobiDBLite consensus disorder prediction 224 253 - -
Vivi1052g00003 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 56 248 - -
Vivi1052g00003 253 SMART rrm1_1 56 122 IPR000504 GO:0003723
Vivi1052g00003 253 MobiDBLite consensus disorder prediction 30 55 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1052g00003 7 129 Eukaryotic Initiation Factors Gene Family AT3G16380 26.923 3.43e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1052g00003 K12893 - gmx:100797778 311.612