Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1052g00002 ATGATGATTTCGCAATGGGGCAGGTGTTGTGGTTTTGCTTTTGTCTACATGGAAGACGAACGTGATGCCGAGTATGCAATTAGACGGCTTGATCAAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGTGTGGAATGGACTAAGCAAGAGCGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAAAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACTAAAGCTTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTCATCACAGTGGAGTATGCTATAAGAGATGATGATGTCAAAAAAGATGGATACAGTCCTGATAGAAGAGGTCGCGGCTCCCCTGATGGGAGGTATGGTCGTGGCAGATCTCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTAGAGCCAGGGATAGCCCTGATTATGGTCGTGGATCAAATCCAGGTTCCAGACCAGAACCAAGAGGAAGCCCCAGGTATGAACGAGCTGAAAGCCCAATTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGGATCAAATCAATCTTCCAGACCAGAACCTAGAGGAAGCCCCAAGCTGGAACGTCCCGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCACGTGATAGGTCAAGATCCTGA 810 0.4593 MMISQWGRCCGFAFVYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRARDSPDYGRGSNPGSRPEPRGSPRYERAESPINGRYDSRSPPPRGSNQSSRPEPRGSPKLERPESPMNGRYDSRSPPPRDRSRS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1052g00002 269 SUPERFAMILY RNA-binding domain, RBD 5 144 IPR035979 GO:0003676
Vivi1052g00002 269 MobiDBLite consensus disorder prediction 146 269 - -
Vivi1052g00002 269 MobiDBLite consensus disorder prediction 146 163 - -
Vivi1052g00002 269 Gene3D - 65 151 IPR012677 -
Vivi1052g00002 269 MobiDBLite consensus disorder prediction 225 239 - -
Vivi1052g00002 269 SMART rrm1_1 72 138 IPR000504 GO:0003723
Vivi1052g00002 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 12 86 - -
Vivi1052g00002 269 MobiDBLite consensus disorder prediction 46 69 - -
Vivi1052g00002 269 Gene3D - 1 64 IPR012677 -
Vivi1052g00002 269 MobiDBLite consensus disorder prediction 46 61 - -
Vivi1052g00002 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 142 IPR000504 GO:0003723
Vivi1052g00002 269 MobiDBLite consensus disorder prediction 240 269 - -
Vivi1052g00002 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 135 IPR000504 GO:0003723
Vivi1052g00002 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 38 IPR000504 GO:0003723
Vivi1052g00002 269 FunFam Serine/arginine-rich splicing factor RS31 63 153 - -
Vivi1052g00002 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 49 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1052g00002 7 145 Eukaryotic Initiation Factors Gene Family AT1G49760 27.703 3.49e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1052g00002 K12893 - gmx:100797778 324.324