Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1052g00001 ATGAAGCCGATCTTTTGTGGAAACCTGGATTTCGATGCGAGACAATCTGATGTTGAGAGGCTTTTCAGAAAATACGGCAAGATTGATAGAGTCGACTTGAAGTCTGGTTTTGCTTTTGTCTACATGGAAGACGAACGTGATGCCGAGTATGCAATTAGACGGCTTGATCAAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGTGTGGAATGGACTAAGCAAGAGCGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAAAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACTAAAGCTTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTCATCACAGTGGAGTATGCTATAAGAGATGATGATGTCAAAAAAGATGGATACAGTCCTGATAGAAGAGGTCGCGGCTCCCCTGATGGGAGGTATGGTCGTGGCAGATCTCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTAGAGCCAGGGATAGCCCTGATTATGGTCGTGGATCAAATCCAGGTTCCAGACCAGAACCAAGAGGAAGCCCCAGGTATGAACGAGCTGAAAGCCCAATTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGGATCAAATCAATCTTCCAGACCAGAACCTAGAGGAAGCCCCAAGCTGGAACGTCCCGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCACGTGATAGGTCAAGATCCTGA 885 0.4542 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFVYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRARDSPDYGRGSNPGSRPEPRGSPRYERAESPINGRYDSRSPPPRGSNQSSRPEPRGSPKLERPESPMNGRYDSRSPPPRDRSRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1052g00001 294 MobiDBLite consensus disorder prediction 171 188 - -
Vivi1052g00001 294 MobiDBLite consensus disorder prediction 71 86 - -
Vivi1052g00001 294 MobiDBLite consensus disorder prediction 171 294 - -
Vivi1052g00001 294 SUPERFAMILY RNA-binding domain, RBD 4 169 IPR035979 GO:0003676
Vivi1052g00001 294 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Vivi1052g00001 294 MobiDBLite consensus disorder prediction 250 264 - -
Vivi1052g00001 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Vivi1052g00001 294 SMART rrm1_1 97 163 IPR000504 GO:0003723
Vivi1052g00001 294 SMART rrm1_1 3 70 IPR000504 GO:0003723
Vivi1052g00001 294 FunFam Serine/arginine-rich splicing factor RS31 88 178 - -
Vivi1052g00001 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Vivi1052g00001 294 MobiDBLite consensus disorder prediction 265 294 - -
Vivi1052g00001 294 MobiDBLite consensus disorder prediction 71 92 - -
Vivi1052g00001 294 Gene3D - 87 176 IPR012677 -
Vivi1052g00001 294 Gene3D - 1 86 IPR012677 -
Vivi1052g00001 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Vivi1052g00001 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Vivi1052g00001 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 289 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1052g00001 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 2.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1052g00001 K12893 - gmx:100797778 392.504