Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi104g00024 ATGGTATATGATTTCATTGTAGTTGTAAGACACCTTGTATTATTGTTTACATCAACTGTTTGGTGCTGCGATGTCTCTAGAGATTCGGGACGACTCATTAGAGGAAGTGCTGACCAGACTGCGAAGCTATGGAATGTGCAGAGTGGTCAGCAATTGTTTACTTTCAATTTTGACTCCCCTGCAAGGTTTGTTGACTTTTCCGTTGGTGATAAGCTTGCTGTTATCACCACTGACCCATTCATGGAACTCACTTCAGCAATCCATGTCAAACGCATTGCAAAAGATCCTGCAGACCAGACTGGGGAGTCTTTGCTTGTTATTAAGGGCCCTCAGGGAAGAATCAATAGAGCCATATGGGGCCCCCTCAACAGAACCATTATCAGTGCCGGAGAAGATTGTATTATTCGTATTTGGGATTCTGAGACAGGAAATCTACTTAGGGAGTCGGACAAGGAATCCAGCCACAAAAAGACAGTAACATCACTGGCCAAATCTGCGGATGGCTCACATTTCTTGACGGGCTCCCTTGATAAGTCTGCTAAGATTTGGGATAGCAGAACATTGTCTCTAATCAAGACATATGTGACAGAACGCCCTGTCAATGCAGTTGCAATGTCGCCTCTCCTTGATCATATGTATTGA 642 0.4408 MVYDFIVVVRHLVLLFTSTVWCCDVSRDSGRLIRGSADQTAKLWNVQSGQQLFTFNFDSPARFVDFSVGDKLAVITTDPFMELTSAIHVKRIAKDPADQTGESLLVIKGPQGRINRAIWGPLNRTIISAGEDCIIRIWDSETGNLLRESDKESSHKKTVTSLAKSADGSHFLTGSLDKSAKIWDSRTLSLIKTYVTERPVNAVAMSPLLDHMY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi104g00024 213 Gene3D - 16 213 IPR015943 GO:0005515
Vivi104g00024 213 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Vivi104g00024 213 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Vivi104g00024 213 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vivi104g00024 213 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 187 - -
Vivi104g00024 213 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
Vivi104g00024 213 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 18 212 - -
Vivi104g00024 213 ProSiteProfiles Trp-Asp (WD) repeats profile. 17 54 IPR001680 GO:0005515
Vivi104g00024 213 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 193 IPR001680 GO:0005515
Vivi104g00024 213 SUPERFAMILY WD40 repeat-like 15 207 IPR036322 GO:0005515
Vivi104g00024 213 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 148 IPR001680 GO:0005515
Vivi104g00024 213 SMART WD40_4 7 45 IPR001680 GO:0005515
Vivi104g00024 213 SMART WD40_4 142 184 IPR001680 GO:0005515
Vivi104g00024 213 SMART WD40_4 100 139 IPR001680 GO:0005515
Vivi104g00024 213 Pfam WD domain, G-beta repeat 154 184 IPR001680 GO:0005515
Vivi104g00024 213 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Vivi104g00024 213 Pfam WD domain, G-beta repeat 105 139 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi104g00024 17 212 Eukaryotic Initiation Factors Gene Family AT2G46290 69.192 3.04e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi104g00024 K03246 - gmx:100793485 358.607