Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi104g00013 ATGCAATCCTCAGGTGATATGGCCGCCCCGGAGGAGGTACTTCTTTTGTCTGAATCCGAGGAAGAACCCATGTTGTTCGACTCCGTGACTGATCCTGGTTTGGATTCGATGGCCGAGGAACCGCGGGGGATAGCCTCGCGCTATGGTGATTCTCTAGTCGGAGCCTTCTGGGCGGTTGAAGATAGGGCCCCCAGTAGTTTAAGGAATTGGGCGGCCAGTTGCCTGTCTGCGACTGAGAGGATATGCTCCAGGTTTAGTGGTGATCGATTCTCCATGTATGAATATCAACAACAACCCTATTGTTCTCAAGAAAATACTATGACAAACAAGAAAATGGATTCTACTCCACTTTCACACACTCTCATCCCTTTCCAAGTCAACCTTACTCCCTCGCAAAAAAATCATCAAAAATTAACCGAGGTTGATTACTTTAAGAATTACAACGACAATGATCACAATAAGGTTGATGTCTCTCTATCTGCCTCTACCGCTGCTGTCTCTGTCCTTGACATTGATCATACCAACATGCCGTCTTTGTTAGATTTCAAACTAAGCATTGGCAGTGGTCTCGATCAAAATCATCTCGCTATCAATGATGCTAGTGATCAAGATGATAATGACATGTCATCTAAATCTCATGACAAAAACACTAAGAATGAGATGGCTGTTCTTCGAGGCAAACTTGCTCGAATGAAAATGGAAAATTGTCGATTGAGTTTCATGCTTGATCAGCTTCAAACACAGTATGATACCTTGCAAATACGTTTTGAGAAAATGAAACAGGACAAGAAGGCCAAGAAAGTTGAACAACAAGAAAGGTTTGATAGAAAACTTGGAAATAAAAGGAAATTTGAGAACGATGGAGTATCAGTTTCAAGAGATTTTTTGGAGTCTGGATTGGCTATTAATGCAGATACTGGGGTGGATCCTGAACCCTCTTCTTCAAGAACAAGAAATTATGATGGATTGGGATCCACGCCTGAGAACAACATTGAAGTTGCCTCCAAAGAGTTAGTCCTAACTAAGAATGGGAAAGTTAGTGATGAAGAAAAGAATGACTATGGTAAAGGAACTAAAGGAGAGGATAATCATGTTGGTCATGCTGAGAGATTTCAAAACCCGAGTCCTCTTAACTATGCTCCAACCTTTGTTAATGATGATTCAACTGATGTTGCTGCAATCTTGACGAGAGCAAGAGTTTCTATTAGAGCTAGATCAGATGGAATCATGGTTTCTGATGGATGCAAGTGGAGGAAGTATGGACAGAAAATAGTGAAAGGAGAGCCGAGTCCTCGTGCTTATTATAGGTGCAGCATGGTTAGGGGTTGCCCAGTTAGAAAACAGGTACAAAAGTGTGCTAAAGACAATAAAGTGGTAATCACAACATATGAAGGCTATCATAACCATACTTTACCTCCAGCAGCCATGGAAATTGCACAAACAACTGCAGCAGCTGCAAGAATGCTTCTTTTAGAATCAACTTCAAGCAAAGATGGAACAACAAATCCAAATATTCCTGGTTCTACAAGTCTTGCAACTATCTCAACTTCTGCTCCGTTTCGGTCTATAACACTTGACTTTACACAAACTTCAAATCCTTTGCAACTCCAAATGCCTCAAAATTAG 1626 0.4133 MQSSGDMAAPEEVLLLSESEEEPMLFDSVTDPGLDSMAEEPRGIASRYGDSLVGAFWAVEDRAPSSLRNWAASCLSATERICSRFSGDRFSMYEYQQQPYCSQENTMTNKKMDSTPLSHTLIPFQVNLTPSQKNHQKLTEVDYFKNYNDNDHNKVDVSLSASTAAVSVLDIDHTNMPSLLDFKLSIGSGLDQNHLAINDASDQDDNDMSSKSHDKNTKNEMAVLRGKLARMKMENCRLSFMLDQLQTQYDTLQIRFEKMKQDKKAKKVEQQERFDRKLGNKRKFENDGVSVSRDFLESGLAINADTGVDPEPSSSRTRNYDGLGSTPENNIEVASKELVLTKNGKVSDEEKNDYGKGTKGEDNHVGHAERFQNPSPLNYAPTFVNDDSTDVAAILTRARVSIRARSDGIMVSDGCKWRKYGQKIVKGEPSPRAYYRCSMVRGCPVRKQVQKCAKDNKVVITTYEGYHNHTLPPAAMEIAQTTAAAARMLLLESTSSKDGTTNPNIPGSTSLATISTSAPFRSITLDFTQTSNPLQLQMPQN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi104g00013 541 MobiDBLite consensus disorder prediction 302 377 - -
Vivi104g00013 541 Pfam WRKY DNA -binding domain 413 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00013 541 ProSiteProfiles WRKY domain profile. 406 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00013 541 Coils Coil 242 262 - -
Vivi104g00013 541 MobiDBLite consensus disorder prediction 308 332 - -
Vivi104g00013 541 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 195 533 IPR044810 GO:0003700
Vivi104g00013 541 Gene3D WRKY domain 396 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi104g00013 541 MobiDBLite consensus disorder prediction 198 220 - -
Vivi104g00013 541 SMART WRKY_cls 411 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00013 541 MobiDBLite consensus disorder prediction 342 368 - -
Vivi104g00013 541 SUPERFAMILY WRKY DNA-binding domain 406 472 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi104g00013 205 530 WRKY Transcription Factor Family AT4G04450 40.351 7.70e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi104g00013 WRKY 2.1e-22 CL0274