Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi104g00011 ATGGATTCTTCCACACTTTCAAACAACGTCACCAACCCTCTCCTAGTTAACCTTACTCCCTCACAACAAAATAATCAAACGTTAACTGAACTCGATTTCTTTAAGAATTGCTTCAACAATGATAAGGTTGTCTCTCCATCTGCCTCTGTCGTCTCTCTCCTTGACATTGATCATACCAACACGCCATCTTTTTTCAATTTCAAACTCAGCACTGGCACTGATCTCTGTCTTGGTCTGAACGTTCTTGCTACCAATGATGCTAGTGAACAAGAAGATGCTGACCTATCATCTAAATCCGATGAAGAAAACCCTAAGAATGAGATGTCTGTTCTTCGAGGAAAACTTGCTCGAATGAAAATGGAAAATCGTCGATTGAGTTTTATGCTTAAACAGCTTCAAACTGATTATGATACCTTGCAAATGCGTTTTGAGAAAGAGAAAAACATTGAAGTTGCAAGAGATTTTTCGGATCATGATTTGGATAATAATGCTGATACAGAGATGGATCCTGATCTCTCTTCTTCAAGAACAAGAAGTTCTGATCAATTGGGATTCCCACATGAGAAAAACATTGAAGTTGCATCCAAGGAGTTAGTCCTAACTAAGAATGGGAAAGTTAGTGATGAAGAAAGGAATGACTATGGTAAAGGGACTAAAAGAGAGGGTAATCTTGTAGGTCATGCTGAGAGATTTCAAAAGCCGAGTCCTCTAAACTATGCTCCAAACTTTGTTAATGATGATTCAACTGATGTTGCTGCAATCTTGACGAGAGCAAGAGTTTCTATTAGAGCTAGATCAGATGGAATCATGGTTTCTGATGGATGCAAGTGGAGGAAGTATAGACAGAAAATAGTGAAAGGAGACCCGAGTCCTCGTGCTTATTATAGGTGCAACATGGTTAGGGGTTGCCCAGTTAGAAAACAGATCGTGAGTTCATATGTCACAACATATGAAGGCTATCATAACCATACTTTACCTCCAGCAGCAATGGAAATAGCACAAACAACTGCAGCAGCTGCAAGAATGCTTCTTTTAGAATCAACTTTAAACAAAGATGCAACACCAAATGCAACTATTCCTGATTATACAAAAAGATTGGAGAGGGGTCTGAAGTATGGTTTTGCGAGGTTCGTAAATGTTGAGGATGAGAGGATGGTGGAGATCAAGTTGAACAACGTCTTGTTAGATGAGAGGAAGATTGCTGCTAACATCTCCAAATTTAAGAGGAAGATCACTAATCTCCATGTTGATGGGGTCACTAGACACAGGAGTTCAAGAGCAGTTTTTAAGAACAAAGGGATGGAAGGAAATGACGGTGTTGTGATCGCCGGTCCTTCCGGTGGATATGAAGGTTTAGCTTCTGGTTACACGAAAAGTTTCGCTGAGGCGGTGAGAACTGCAACGCCCGCAAAGACGATTATTTGCTTAATTAGTCGTTTGGAATATTTAGTGAAATTTTTGCGTTTTGGGACGATTTAG 1479 0.3996 MDSSTLSNNVTNPLLVNLTPSQQNNQTLTELDFFKNCFNNDKVVSPSASVVSLLDIDHTNTPSFFNFKLSTGTDLCLGLNVLATNDASEQEDADLSSKSDEENPKNEMSVLRGKLARMKMENRRLSFMLKQLQTDYDTLQMRFEKEKNIEVARDFSDHDLDNNADTEMDPDLSSSRTRSSDQLGFPHEKNIEVASKELVLTKNGKVSDEERNDYGKGTKREGNLVGHAERFQKPSPLNYAPNFVNDDSTDVAAILTRARVSIRARSDGIMVSDGCKWRKYRQKIVKGDPSPRAYYRCNMVRGCPVRKQIVSSYVTTYEGYHNHTLPPAAMEIAQTTAAAARMLLLESTLNKDATPNATIPDYTKRLERGLKYGFARFVNVEDERMVEIKLNNVLLDERKIAANISKFKRKITNLHVDGVTRHRSSRAVFKNKGMEGNDGVVIAGPSGGYEGLASGYTKSFAEAVRTATPAKTIICLISRLEYLVKFLRFGTI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi104g00011 492 Coils Coil 129 149 - -
Vivi104g00011 492 Gene3D WRKY domain 256 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi104g00011 492 SMART WRKY_cls 271 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00011 492 ProSiteProfiles WRKY domain profile. 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00011 492 MobiDBLite consensus disorder prediction 167 181 - -
Vivi104g00011 492 MobiDBLite consensus disorder prediction 154 188 - -
Vivi104g00011 492 MobiDBLite consensus disorder prediction 88 108 - -
Vivi104g00011 492 MobiDBLite consensus disorder prediction 91 108 - -
Vivi104g00011 492 Pfam WRKY DNA -binding domain 273 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00011 492 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 89 354 IPR044810 GO:0003700
Vivi104g00011 492 SUPERFAMILY WRKY DNA-binding domain 266 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi104g00011 92 358 WRKY Transcription Factor Family AT4G04450 37.037 1.23e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi104g00011 WRKY 1.7e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi104g00011 - - vvo:131624528 948.732