Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi104g00003 ATGGATTCTTCTTCACTTTCACAGAGTAGCACCCCTTTCCAAGTCAACCATAGTTCCTTCCAAAAAAATTATCAAACAATAACCGAGGTTGATTTCTTTAAGAATTACAACAATGATCGTAATAATAATAATAATAATAAGGTTGTTGTCACTCCATTTAGCTGTCCCACCGCTGTCTCTTTCCTTGACATTCATCGTACCAACATGCCATCTTTTCTTGATTTAAAACTCAACACCGGCACCGGTCTCAGGCTCGGTCTCAATATTCTTGCTACCAATGATGCTAGTGATCAAGATGATGATAATGACCTATCATCTAAATTCAATGACGCAGCAGACACTAAGAATACGATGGCTATTTTTCGAGGCAAGCTTGCTCGAATGAAAATGGAAAATAGTCGATTAAGTTTGATGCTTGATCAACTTCAAACCGACTATGATATGCTGCGGATGCATTTTGAGAAAGTGATGCATGACAAGAAGAATGAGGAAGTTGAAGGGTTTGTTGGAAAATTTAAAAAGAAAAGAAGAACTGTGAATGGTGGAGTATTGGTTCCAAGAAATTTCTTGGAGCTTGGTGTGGATATTAATACTGATACTGAGATAGATGCTGAACTCTCTTCTTTAAGAATAAGAAGTAAAGATCGATTGGGATCCCTGCCGAACACCAACATTGAAGTTTCTTCGGAGGATTTAGTCCTAAATAAGAATGGGAATATTAGTGATGAAGAAAATAAGGAGCTTGATAGAGGGATTGAAAGAGAGAATAGTTCCATTGGTCATTCTGAGAGATTTCAAAGGCTGAATCCTCAAAACTTTGCTTCAGACTTTGTTAATATTGATCGAATTGATGTTGCGGCTATCTTGATGAGAGCAAGAGTTTCTGTTAGAGCCAAATCAGAGGTAAATTTGTCAAAAATTTCTGATGGATGCCGATGGAGAAAGTATGGACAGAAAAAAATGGCAAAAGGAAACCCGAGTCCACGTTCTTATTATAGGTGCTCCATGGGTAGTGGTTGTCCAGTGAGAAAACAGGTACAAAAGTGTGCTGAAGACAAAACAGTGGTAATCACAACATATGAAGGATATCATAACCATACTTTACCTCCAGCAGCTATGGAAATGGCACAAACAGCTGCAGCAGCTGCAAGAATGCTTCTTTTAGAATCAACCTCAAGAAACGATGGAAAAGTGAATGCGAGTTTCCTCCAGAGGGCAATTGTTCCTTGTTCTACAAGTCCTACAACTATTTCAACTTCTGTTCCATTTCCGACTATCACACTTGATTTTACTCAAACTCCAAATCCTCTACAACACCAAATGCTTCAAAATCAGTTATAA 1341 0.3811 MDSSSLSQSSTPFQVNHSSFQKNYQTITEVDFFKNYNNDRNNNNNNKVVVTPFSCPTAVSFLDIHRTNMPSFLDLKLNTGTGLRLGLNILATNDASDQDDDNDLSSKFNDAADTKNTMAIFRGKLARMKMENSRLSLMLDQLQTDYDMLRMHFEKVMHDKKNEEVEGFVGKFKKKRRTVNGGVLVPRNFLELGVDINTDTEIDAELSSLRIRSKDRLGSLPNTNIEVSSEDLVLNKNGNISDEENKELDRGIERENSSIGHSERFQRLNPQNFASDFVNIDRIDVAAILMRARVSVRAKSEVNLSKISDGCRWRKYGQKKMAKGNPSPRSYYRCSMGSGCPVRKQVQKCAEDKTVVITTYEGYHNHTLPPAAMEMAQTAAAAARMLLLESTSRNDGKVNASFLQRAIVPCSTSPTTISTSVPFPTITLDFTQTPNPLQHQMLQNQL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi104g00003 446 Coils Coil 125 145 - -
Vivi104g00003 446 SUPERFAMILY WRKY DNA-binding domain 303 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi104g00003 446 ProSiteProfiles WRKY domain profile. 302 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00003 446 Gene3D WRKY domain 291 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi104g00003 446 Pfam WRKY DNA -binding domain 309 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00003 446 SMART WRKY_cls 307 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi104g00003 446 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 100 436 IPR044810 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi104g00003 114 433 WRKY Transcription Factor Family AT4G04450 43.731 1.18e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi104g00003 WRKY 8.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi104g00003 - - vvo:131624519 804.668