Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1048g00005 ATGGAGTCTTGGAATTTTGTTTCTCAAGATAAAGGTTCAATCTTTGGTTGGGATTTGAAAACCCCATCTAGTTTTTTAGGTCAACAAACCATTGAAAATGAGACCAATCAAAGTTTTGAGGAATTGGGTTTTCATGGAATGTTGGGGAAACAATTGATGAATAATCTTGATGATGATGTTGTTGTTGGTGGTAGTAGCAAAATTGTTATGGCTGGACCTAATGCATTTTCAGTTAGTTCACAAGAACACTTCAATTCCAAGCTTTCAAACTCATTGGTAGACACTAATGATTGTAATTCACTCATTGATTTGAAGCTTGGTGGATTTGGTGATCATGGAGGTGCAATTGGTGCATCATTCTCTAAGGGGGCTGCGGTTTTATCGTCGTCGTCTGGATCGTTACCACCGACCAAGAGGGTGCGGTCTTCGGGAGTGAACTCGCAGATTGCTTACTGTCAAGTGTATGGATGTAATAAGGATCTGAGTGGTTGTAAAGAGTATCACAAGAGGCATAAAGTTTGTGAGATTCATTCAAAGACTTCTAAAGTTATTGTTAATGGAATTGAACAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAGCGTCTTGCAGGCCATAACGAGCGCCGAAGAAAGCCACAAGTTGGTATTCACTCTGGAAGAGCTGGGAGGTTGCTTCAACCATATGGCGATAGCAGATTCCAGGGAAGCATGCTAACATCGGCATCTTTTATATGCCAAGATATACTCCCCAGCGAGGTCTTTTCTTCTGAGAGATGTGGAGCTAGTAACTGGAGGAGATCTATAAAAGCCGAAGACGGAACCGGAACTGGTTTTAGGCCTCTTTCTTCGATTCCAATTACCAGTGCACATCCTCATTCAAGAACTCTATTTCCTTCGTATGGGGATAAACAATTTCCCTTTCTACACGAAAATGCTCCTACATCTGCTACTGGAAGCATCTTCTGTGAAGACAATAGCCAATATCCTCCTATCCTCGAAGGCTCGAATTCCAGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGCGAAGACTTCAATGTTTTCGAAACAGAATCAACTGTTCAAGGATTATCGGGAGTATCGGATGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGCCAATCGTCGGGAATTCCCGTGCCGCGTCATCTGGTCCTTCCGAGCAGCCATAGCCATTTTAACATGAGTCAGGTTTCCGATAAGATGATAGGAATGAGTTCACAAACATCAAGTGGTGTGTCGGATAGGTTTCCGTCTGAATTAAATCCCACAGATGGAAATCATCTTAGTCCTATACTGATATCAGACAATAATGAAATTGTCCATTTTGAAATGGCGGATCGGATTTTTCAAGGGTCAGATTTTGTCAATGTAAAAGATCGTCTTTCGAGTGAAGATGGCACAACCATTGACTTGCTTCAACTTTCCTCACAACTTCAGCGCGTTGAGCACCAGAGACGAGCCTTGCAGGTGAAGCAAGAAAATGGTTCTTCTTGCTCTCTCCGGATTACTTAA 1599 0.4203 MESWNFVSQDKGSIFGWDLKTPSSFLGQQTIENETNQSFEELGFHGMLGKQLMNNLDDDVVVGGSSKIVMAGPNAFSVSSQEHFNSKLSNSLVDTNDCNSLIDLKLGGFGDHGGAIGASFSKGAAVLSSSSGSLPPTKRVRSSGVNSQIAYCQVYGCNKDLSGCKEYHKRHKVCEIHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQPYGDSRFQGSMLTSASFICQDILPSEVFSSERCGASNWRRSIKAEDGTGTGFRPLSSIPITSAHPHSRTLFPSYGDKQFPFLHENAPTSATGSIFCEDNSQYPPILEGSNSRSQSLFQDTSLGSEDFNVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSGIPVPRHLVLPSSHSHFNMSQVSDKMIGMSSQTSSGVSDRFPSELNPTDGNHLSPILISDNNEIVHFEMADRIFQGSDFVNVKDRLSSEDGTTIDLLQLSSQLQRVEHQRRALQVKQENGSSCSLRIT 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1048g00005 532 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 85 515 IPR044817 GO:0003677
Vivi1048g00005 532 Gene3D - 142 213 IPR036893 GO:0003677|GO:0005634
Vivi1048g00005 532 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
Vivi1048g00005 532 Coils Coil 500 520 - -
Vivi1048g00005 532 SUPERFAMILY SBT domain 150 230 IPR036893 GO:0003677|GO:0005634
Vivi1048g00005 532 FunFam Squamosa promoter-binding-like protein 14 143 213 - -
Vivi1048g00005 532 Pfam SBP domain 152 225 IPR004333 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1048g00005 102 244 SBP-box Gene Family AT1G69170 58.741 7.65e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi1048g00005 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1048g00005 - - gmx:100777766 733.021