Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1047g00001 ATGATTGAAAGTAAAGATCCTGCAATTAAACTATTCGGCCAAAAGATTCTAGCTGAAGCTATGGATGTAGAAGAAGAAAGAGATGGATATCTTAGCGAGTCTGAGAGTGAAGATGAAGAAACAACAAAGGACCATGAAGCAAAAAAAGACACTGAGAAAAGGAAAGAAGTTGATCCTCCACCAAATTCTGCAGAGATCAAGAAAACATCAACAACAGCATTAGCAGAAGCTAATCAGAATTCAAAAACACCATCTGTAGATGAAGAAACATCACAATCCAAAAATGAACAAAGCCTTGTAGCAGCATCAACAACAAACAACAATAACAACAATCTTGAGAAAACACTAAAGAAGCCCGACAAACTACTCCCATGTCCGCGCTGCAACAGCGCGGACACAAAATTTTGTTACTACAACAACTATAATGTCAACCAGCCCCGCTATTTCTGCAGAGCGTGTCAAAGATACTGGACTGCCGGCGGAACCATGAGGAATGTTCCGGTTGGTGCAGGGAGAAGAAAGCACAAAAACAACTCTTCATCGCATTATCGTCACGTCACCGTCTCTGAGGCACTTGATGCAGCAAGAGTTTTCTCTCCTGATGAAACTCATTATGCTCCAAATTCGAAAACCAATGGTAGACTCCTTAGCTTTGGATTGGATCATCCAACAATCTGCAATCCTGCAGAGAAAAGGGGTCTCAGCGACACTCGTGACGATCATTGTTCAAGTGCATCTTCTAATACAGTTTCAAAATCTATGGAGCAAAGTGGCAAAAACATGTCACAAGAATCATTACCACAGCAAAATTGTGGTTTTGTTCCTCAAGTTCCATGTATCACAAGCGTTCCTTGGCCTTACACTTGGAGTTCTTCCGCGATTCCCTCGCCGCAAACATTGTGTCCTCCTGGATTTCCCATGCCATTCTACCCTACTCCATTTTGGAACTGCGGTGTTCCCGGAAATTGGAATGCTCCTTGGTTTCCCTCTCCTACTTCCGCTACAAGTCCAAGCTTATCGAACTCTAGTTCAAATCCTCCAACGCCTGGGAAACGCACGAGGGATCATAATGATGACGATGATGACACGACTAAACAAGACGATCTTCGAAAAGAAGAATCACCAAGACAAAGAAGTGGGAGTGTATTGGTTCCAAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGAAACACTTGGAATCAAGAATGAAAGTGTGAGTAAGGGAGGCATGACCAAAGCTTTTCAACCAAAGAAAGATGGAAAAGAACATGTTGAAACCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTGGCTAGATCACTTAATTTTCATGAAAATTCTTAA 1365 0.4198 MIESKDPAIKLFGQKILAEAMDVEEERDGYLSESESEDEETTKDHEAKKDTEKRKEVDPPPNSAEIKKTSTTALAEANQNSKTPSVDEETSQSKNEQSLVAASTTNNNNNNLEKTLKKPDKLLPCPRCNSADTKFCYYNNYNVNQPRYFCRACQRYWTAGGTMRNVPVGAGRRKHKNNSSSHYRHVTVSEALDAARVFSPDETHYAPNSKTNGRLLSFGLDHPTICNPAEKRGLSDTRDDHCSSASSNTVSKSMEQSGKNMSQESLPQQNCGFVPQVPCITSVPWPYTWSSSAIPSPQTLCPPGFPMPFYPTPFWNCGVPGNWNAPWFPSPTSATSPSLSNSSSNPPTPGKRTRDHNDDDDDTTKQDDLRKEESPRQRSGSVLVPKTLRIDDPNEAAKSSIWETLGIKNESVSKGGMTKAFQPKKDGKEHVETSPMLMANPAALARSLNFHENS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 332 391 - -
Vivi1047g00001 454 Pfam Dof domain, zinc finger 121 177 IPR003851 GO:0003677|GO:0006355
Vivi1047g00001 454 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 229 267 - -
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 332 350 - -
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 351 377 - -
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 64 113 - -
Vivi1047g00001 454 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 36 62 - -
Vivi1047g00001 454 PANTHER CYCLIC DOF FACTOR 2 5 454 IPR045174 GO:0003700|GO:0006355
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 240 267 - -
Vivi1047g00001 454 MobiDBLite consensus disorder prediction 23 115 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1047g00001 1 452 C2C2-Dof Transcription Factor Family AT3G47500 43.927 3.48e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1047g00001 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1047g00001 - - gmx:778113 491.115