Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1046g00002 ATGGGTGTTAAAGATGATTTCAAGATGGATAATCAACATTTACATGATGATGATGATGATGTTCCACTCCCTGGATTTAGATTCCATCCTACTGATCAAGAACTTGTCACTTTTTATCTTCAAAGAAAACTTGACAAGAAACCTATTTCTATTGATCTCTTCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCTAGTGTACATGGAGAAGAAAAAGAAGGTTACTTCTTTTGCAAAAGAGGGAGAAAATATAGGAACAGCATAAGGCCAAATAGAGTAACTGGATCTGGATTCTGGAAAGCAACTGGAATAGACAAAGCAATATACTCAAAAGGAGGAGAAGGAAATGATTGCGTTGGACTCAAGAAAACACTTGTTTACTATCGCGGTAGCGCTGGTAAGGGCACCAAAACGGATTGGATGATGCACGAGTTTCGTCTTCCTTCGAATATTGCTACCAACACAAATCTTGCTCATGCTAAGAATGATAATGATATTTCTCATGAAGCAGAAATTTGGACATTATGTAGAGTTTTCAAAAGAAATGTATCACAAAGGAAACAACAAATACATGAGATGAAACCGTTAGGTAACAAGCCACAGGCTATTTATGAAAAGAGCAGTAGAATGAGCAGCAATATGGAATTCATGTTAAATCAACAAACATACATCAATTTTGGTTCAAGCCATGAAGTTCATCATAACCAGGATATACCAGTAAATAATTATGCAAATAATGGTCAAAGGAATCAATTTTATGTGAGTGAGTTGACCCCTTCAGTTCCAGAGCAACCAGCTCAACAAATTTTAATACCATCTTCAAATTTTTGGATTCAGGAAGCTGCAGATGAGTTATTATCATATGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 939 0.3557 MGVKDDFKMDNQHLHDDDDDVPLPGFRFHPTDQELVTFYLQRKLDKKPISIDLFKQIDIYKYDPWDLPKSSVHGEEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKAIYSKGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNIATNTNLAHAKNDNDISHEAEIWTLCRVFKRNVSQRKQQIHEMKPLGNKPQAIYEKSSRMSSNMEFMLNQQTYINFGSSHEVHHNQDIPVNNYANNGQRNQFYVSELTPSVPEQPAQQILIPSSNFWIQEAADELLSYDNWDELGSVVKFAVDSPSL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1046g00002 312 SUPERFAMILY NAC domain 22 186 IPR036093 GO:0003677|GO:0006355
Vivi1046g00002 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 242 - -
Vivi1046g00002 312 FunFam NAC domain-containing protein 35 31 189 - -
Vivi1046g00002 312 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Vivi1046g00002 312 Gene3D NAC domain 31 192 IPR036093 GO:0003677|GO:0006355
Vivi1046g00002 312 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1046g00002 19 194 NAC Transcription Factor Family AT5G39820 56.989 5.43e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1046g00002 NAM 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1046g00002 - - gmx:100790471 424.091