Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1045g00011 ATGTCACTTAGAGAAGGTACACTGCCACTTACTGATCACTTAAAAGAGAGGAGTGGATTATTCCAAACGAATCGGCCTCATACAGTATGTGTGAATGATGGTAAAAGCAATAATCATTCAGTGAAGGATGTTGGGAACTCCACTTATGCAGAAGACATGGGAGCAAAAGAAAACTCAGTGTCCTTAATATTAGAGGATGGCAACAAATCTTCGAAAGAAGATTTACCTAATAAAAAACGTTTGTCCTCTAAGAGGAATAGGGTTTACTCGGCTGATGAGCATTTAACAAGTTGCTTTAATGAAAAGCAGGCTTGTATAAATGAACGTGATGAACTCTTAAGTAAAAAAAGGATTAAACGTAGTGCATTGACAAATTTTGATTCCAAGAAAGAAAAGCAAGTTTCTCGTCTTGAAAAGGAAGTGTCAGAAAACTCGACTGAAAATGTTCTAATTTCTGAGAATGTAGGGCATCAAACCAAAAAGAAAAACAGGAAAGCTCTGAGTGATGGATCCTTAGAGGCTAGTCATAATAGGTGCTTTGCTTCAAATTTGTGTCTGTCAAGTGGTCAAAATGAAGCCTTTCATGCTGAATCAGATATTGCCTTTAAGGCAACTTTGACGCCTCAGCAGAAAACTTCTGGAGGTAAACCCCTGTCTGAACATGAACCAGATTTGCAACTTAAAGATTTAAATTGTTCCCAGCAGACTGCTAGTAGTGTTAAAGCTCAAGATGATACTGATAATGGCTGTGGGATAGAGATACCAGGTGATACAGTTGCGTACCAAGGTGAAAAGATTAATCTCGTAATGAAAAAGCACAAAAAGAGAAGTCTTGATACAAAGTGTAGCGAAGGTGGTCAATTACTGGTCTGTGAAGCGGTTACTGGCCCATTATTGGTTCCTGAAAGTTGTATTGGTATGACGACCAACATTTATCCTCAGCATACATCTGGAGTTGATCCTTGCCATAAATTTATAGATGAAACTAATGATACTGTAGATGTTGAACCCATTCGAACATATGATGGTAATGCAAATAAAATTCAGCATATGACTAATCAATCTCAAACCCAGCAGCAGGAGCCAAATGTTGCATCTTCAAATGCCTCTCGGAAGCCAGTTGCTAGTGACAAAGCTGTAGTTGATACTGTCAATGATTGTGGAGCAGAGTTATCAAATGATAGTGATGAGCATCACAACGAAAAGATTGATCTTGGAGCCAAAAAAGATGAATTCGTGAACTCCCAGCACACTTTTGGTCAAGATTTGCCAGCAATGACTGAATCGACCAGACAAAATCTTTGCATGAAGTGCAATAAAACTGGACAATTATTGGTTTGTAAAACTACCACTTGTTCTTTGACGGTGCATAAAAACTGCCTGGGTGCATCTGCTCAGTTGGATGCTAAGGGAAACTTTTTCTGCCCATTTTGTGCTTATTCTAACACTATTTCAGAATATCTTGAAGCCAAGAAAATAGCTTCATTGGCAAGGAAAGAATTAGCTATCTTCATTACTAAGGGTATAAGAAAAGAAGCTGTAGAACGTGTTCATAAATCAGGTAGACAAGAATGTACATTTTCAAGGAAGAGTTATAAGTGCGAGCATACTCCGTTAACAGTGAATGAAGAAAATAGAGAAGATCATGCTGGTGAGCATGCAAATAAAGTTGGTAATTTTCCTTTTGAAAGAAGTCAGCAACAAGTTCCTATTTTAGCAGTTCACTCGTCATCCTTCAGAGAAAAGGAAAATGTAAAAAATGGGTTAGCAGGTGATGTAAGAGAAGAGGATGACTGTGAAATGCTGAATGCAAAGAGCTTAACTGATGAAAGAGTTGAAGACAGAGAAATGGAAACTGATCATGTAGGTGGACATGGCAATGAAAAGATTTCTTGTAAGAAGCTAAAGATTGTGTGTGCTAATGAAAGTAATGAAGAAGTTCTACAGAATATGGCAGAGCACAGTATGGATGGAACAGTAGAGCCAGTTTGGGCTCACAATACTGTAAAGGATGAACTTTCTAAAGATGAATCCAAGAAGCGTATTATTTCTAGATACTCCATGAGATTTCGTATGCATGAAGTTCAGAACAAAATCAAAGAAAGCCCTCAGATAAGACGGAAAAAAATCCCATGGACAGTTGAGGAGGAAGAGCTGATACAGGAAGGGGTCCAGAAGTTTGGCTCCCGCGACTCAAAACTACCATGGAAGAAAATTTTGGCATTCGGTTCTCACTTGTTTGAGAAGAATGACAGACTTCGTACTCCACAAGATTTAAAGGATAAATGGAAAAACATGTGCAAAGCACACTCAAAATTGAAATAA 2325 0.3819 MSLREGTLPLTDHLKERSGLFQTNRPHTVCVNDGKSNNHSVKDVGNSTYAEDMGAKENSVSLILEDGNKSSKEDLPNKKRLSSKRNRVYSADEHLTSCFNEKQACINERDELLSKKRIKRSALTNFDSKKEKQVSRLEKEVSENSTENVLISENVGHQTKKKNRKALSDGSLEASHNRCFASNLCLSSGQNEAFHAESDIAFKATLTPQQKTSGGKPLSEHEPDLQLKDLNCSQQTASSVKAQDDTDNGCGIEIPGDTVAYQGEKINLVMKKHKKRSLDTKCSEGGQLLVCEAVTGPLLVPESCIGMTTNIYPQHTSGVDPCHKFIDETNDTVDVEPIRTYDGNANKIQHMTNQSQTQQQEPNVASSNASRKPVASDKAVVDTVNDCGAELSNDSDEHHNEKIDLGAKKDEFVNSQHTFGQDLPAMTESTRQNLCMKCNKTGQLLVCKTTTCSLTVHKNCLGASAQLDAKGNFFCPFCAYSNTISEYLEAKKIASLARKELAIFITKGIRKEAVERVHKSGRQECTFSRKSYKCEHTPLTVNEENREDHAGEHANKVGNFPFERSQQQVPILAVHSSSFREKENVKNGLAGDVREEDDCEMLNAKSLTDERVEDREMETDHVGGHGNEKISCKKLKIVCANESNEEVLQNMAEHSMDGTVEPVWAHNTVKDELSKDESKKRIISRYSMRFRMHEVQNKIKESPQIRRKKIPWTVEEEELIQEGVQKFGSRDSKLPWKKILAFGSHLFEKNDRLRTPQDLKDKWKNMCKAHSKLK 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1045g00011 774 SMART sant 708 769 IPR001005 -
Vivi1045g00011 774 CDD SANT_TRF 710 768 - -
Vivi1045g00011 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 487 IPR013083 -
Vivi1045g00011 774 ProSiteProfiles Myb-like domain profile. 704 767 IPR001005 -
Vivi1045g00011 774 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 310 - -
Vivi1045g00011 774 MobiDBLite consensus disorder prediction 352 373 - -
Vivi1045g00011 774 ProSitePatterns Zinc finger PHD-type signature. 435 478 IPR019786 -
Vivi1045g00011 774 MobiDBLite consensus disorder prediction 66 85 - -
Vivi1045g00011 774 SUPERFAMILY FYVE/PHD zinc finger 431 483 IPR011011 -
Vivi1045g00011 774 ProSiteProfiles Zinc finger PHD-type profile. 432 481 IPR019787 -
Vivi1045g00011 774 SUPERFAMILY Homeodomain-like 706 768 IPR009057 -
Vivi1045g00011 774 MobiDBLite consensus disorder prediction 352 375 - -
Vivi1045g00011 774 Pfam Myb-like DNA-binding domain 711 765 IPR001005 -
Vivi1045g00011 774 Gene3D - 701 770 - -
Vivi1045g00011 774 MobiDBLite consensus disorder prediction 67 85 - -
Vivi1045g00011 774 SMART PHD_3 434 479 IPR001965 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1045g00011 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1045g00011 - - cam:101508857 1078.16