Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1045g00001 ATGATATTTGTACTTTCTCTATCTGTATGTATAAAAGTGAATCCACATATTATCTCACAACTGTTCCTACTCTCTCATCTCAAAAACACTATATACCTTTTCTCTTTTTCTCTTCCATCAATGGCAGACCCTTACTCCAATTTCTTCTCTTCAAATTTCTTTCAATTCAACCATTACCCTTCTTCAAACCCTTCACCCCACCACCACCATCACAATCATCATCATCCTAATTATCTTCACAACTTCATCAATCACACATCCTTCAACAACACTAACAACAACACTTTTTTCCACTACCATCACCATCACCATCTTCACTCTACTACATCTTCACCTCCTTCCCCTCCTTTAAAAGAAGCTCTTCCACTTTTGAGCCTAATCCCTACAAAACAAGAAGAACATGAATATCATCACCATCATCATCATGAAGATGAACCCCTCTCTTTAATGGATGTGGAAGATAAAAATCACAAAGTAGATGAAAAGGATCATCAAGGTGTCACTGTTGCACTACATATAGGGTTACCAAACCCTAGTGCTGCTGAGATTGCAAATATGATGATATCTTCATCTTCTTCTGAGACTATGATCAATGAAAGAGATCAACAACATCAACATCAACATCAACAAGAACAACAACAAGGAGATGTTATAAGTGAAGATTCATCATCTTATGATTTGTTGAGTAGTAATAGATCAATGAACAAGGGTCAATATTGGATCCCTACACCTTCTCAGATTCTAATCGGTCCTACACAGTTTTCTTGTCCAGTTTGCTACAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCATGCTACTGTTGTTCACCAGGTTGCAGGAACAACATTGATCATCCGAGAGCGAAACCGTTGAAAGATTTCAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCCTTCATGTGTAGAAAATGTAGCAAGGCTTTTGCTGTAAGAGGAGACTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGATCACTAAAAGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATTGATCGTTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTAGAACAAGATAATGAGTCCACTCAGACTCAGTAG 1254 0.3796 MIFVLSLSVCIKVNPHIISQLFLLSHLKNTIYLFSFSLPSMADPYSNFFSSNFFQFNHYPSSNPSPHHHHHNHHHPNYLHNFINHTSFNNTNNNTFFHYHHHHHLHSTTSSPPSPPLKEALPLLSLIPTKQEEHEYHHHHHHEDEPLSLMDVEDKNHKVDEKDHQGVTVALHIGLPNPSAAEIANMMISSSSSETMINERDQQHQHQHQQEQQQGDVISEDSSSYDLLSSNRSMNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDRFEEEDEPASEVEQDNESTQTQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1045g00001 417 SUPERFAMILY beta-beta-alpha zinc fingers 320 358 IPR036236 -
Vivi1045g00001 417 MobiDBLite consensus disorder prediction 208 229 - -
Vivi1045g00001 417 Gene3D Classic Zinc Finger 314 390 - -
Vivi1045g00001 417 SMART c2h2final6 338 358 IPR013087 -
Vivi1045g00001 417 SMART c2h2final6 254 276 IPR013087 -
Vivi1045g00001 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Vivi1045g00001 417 MobiDBLite consensus disorder prediction 192 229 - -
Vivi1045g00001 417 Gene3D Classic Zinc Finger 253 276 - -
Vivi1045g00001 417 PANTHER ZINC FINGER PROTEIN WIP2 83 412 IPR043584 GO:0003700|GO:0010468
Vivi1045g00001 417 FunFam Zinc finger protein WIP2 307 389 - -
Vivi1045g00001 417 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Vivi1045g00001 417 SUPERFAMILY beta-beta-alpha zinc fingers 250 276 IPR036236 -
Vivi1045g00001 417 FunFam zinc finger protein WIP2-like 253 276 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1045g00001 41 417 C2H2 Transcription Factor Family AT3G57670 61.307 2.52e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1045g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1045g00001 - - tpra:123897861 511.916