Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1044g00006 ATGACAGAGCAAACAAAGTTCAGCGTCTTATGCAGTCTCCTAACATGGACGCAGCGAACAAAATCACCGCCGAAGAAACGCGCCAAGTTCCGGAAGTTTCTCGACTCGTTCTGCCCCGATCGGAACTACTTTCCCGCTATTCGCCTCATTCTTCCTAACCTTGATCGCGAACGCGGCTCCTATGGTCTCAAGGAGTCCGTTCTCGCTACTTCGCTCATTGACGCTCTTGGAATGTCTAAAGATTCGCCTGATGCTCTGAGACTAATCAATTGGCGGAAAGGTGGTTCCAAAACTGGTGCTAATGCCGGTAATTTCGCACTTGTCGCCGCCGAGGTGCTGCAGCTTAGACAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGTTGAATGACCTGCTTGATCAATTGTCTTCAAGTGAAAATAGGGGTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAACGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATTTGAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAACTAAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGGCCTCAATTAGCTAAGAGAGTTGCTAACGCTGCTGAAGCATGGAAGAAGCTTCATGGTAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGCATCCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCGATGTCAGATATCATAATACAAAATATTCTTGTAGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAATCGTTTTGCTGAGTTTGGCTCTAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTAATAGACAGAAAGTTTATACCCAATATGCCTTGACTCGAGAATGGTTAGACATTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAGCGGCATGAGATTCTACGTAAAGTTGTGAGGCCATTGAATGGTCGTTTGGAAATTTTACTACCTAATAATGGTGGTATCAACAGTCATCGGCCTTCTGGTGAACCATGTTGGTCGCTTATTGTTCAAAATGCGGATGAAGTTGAAAGATTTTTTAAAGAAACCATTGAAAATAGAGATGAAGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCCAGTGACCGCAGTGGAAAATGGCTGAAATTGAAGCCTGAATACGTTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACATGGGGGAGAGGTTGCTCAATTCTTGGTGGGTCTTGCAGAGCGTCCATCCCCAAATACACATCCCAAGCGATTTGTCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGAAGCAGTAGTAACCAAATTGAAACCTTACTTCAGAAAGTATGAGTATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTTACTAATCATTCCAAAGAAAGACCTGATGTGTGGGTCGACAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTCTCTGCACCTTACTGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGGCAAGGCTTGGCATGAATGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAATGGTACCACACAGAGGGATACAGAATACGGGAACAAGAAGGGCAGTAAACAAAAACAAACAAAATCCTCTACAAAGGGAGAAAAGAAAAATATGTTAATTGTTCCTTCTCATTTAAGCCAAACAGATGTTTCCAGTGTTAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTCAATGTCCCTCCATCTCATTCTCTTGAGTCCTTCCACAAATTAGTTGCTGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCCGTCACCCATTGTGTTGCAGCAGACAGCAAAGGGTTTAAATTTGAAGCAGCAAAACGTCGTGGTGATATCATTCATTATACCTGGGTACTAGATTGTTATGCACAAAAGAAGCTCATCCGCCTACAGCCAAAATACTTCCTCTTCCTATCTGAAGAGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCAGACTCTTACTACTTGGATCTCAATCTTGAAGACATCAAACAGCTCTTAGGCAATATTAATAGGTCAGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTGTCTTCAATGGATGCTCCATTTATTTCCGCAACATAATGTCATCACTGAAAGAAGATTGGCAATATTTATTAGAACTTTCTTTGAAGAGACTCAAGCTTGAAGTTCTCATGGGTGGTGGTAAATTCACCTCTAATATCAATTTTGCAACTCATGTAGTGGCTTTGTTCATACCAAGTTATCATACCAACCATGAAGAAGAAATACAGAGTAGTTTCACTTCAGTTGAGAGAAAACTTCTCCGAATCAAGAGGTTGCATGTAGTTAATTCCAAGTGGTTAGAAGATTGTTTGAACAGTTGCCAAAGATTATCAGAAGACACTTATAGCTTGAAGTCCTTTGAAATAGAAGAGTCAACCGCTGAGGATTGCGGACATGACTTGGCGGTGGATGCTCATATGGTTGAAGATAATGTAGAAAACCAAAATGAATCTTTCTCTAACAAGGTAAGTAAACAGAGTAGTGCAAAAGCTGCTTCTCAAGACAGTTTGGCTTTGGCATCACAAGGGACGCGTGGCCAAAGGAAACGAGGAAGGCCAGCTGCAGGCAAAGGTATTAAAAAAATAAAAACAGACGGAAACCAAGCTCGAAGAGCAAGATCGCAAATTACAAAAAAACGCGCTAAAATAAGTGAATATGAATCTGATGAAAGTGATTCTCTTGAAAAAAGACCATACGAGCAAGAGGCCGACATTAAAGAAGGAAGTGCTGGTTTTCACAATGAACAATTAGAACCACATGAGACTGAAGAAACTCACAATGTCCAAAGTACTGAAGGAGTAGAGGATTTGAATGTCAACCAACATGAAAATATGTTGGCTACTGAAATTGAAATGAATGATGTGCGCAATGATGAGCAAAGCAGTCAGGCGACTGAAAAACTTGAAATTATGACTGATCCTATGCAGGCAATGTTACTTGACATGATTCCTAGCCTTGCTATGAGTAAAGTTGAGCAACCTACTAATCGCCGTGTTGAAGAAGAGAAGCGACCGGAAACCTCCACCAACATAGAGCCTTCGACTTCAAAGAAAAAGAAAGTTAGTTTCAAGGCTATGGCTGCTAACCTGCTCAACGATTGGTAG 3519 0.4081 MTEQTKFSVLCSLLTWTQRTKSPPKKRAKFRKFLDSFCPDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSKDSPDALRLINWRKGGSKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSDIIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSNRQKVYTQYALTREWLDIAFDILYFGDTSVIHQTLKERHEILRKVVRPLNGRLEILLPNNGGINSHRPSGEPCWSLIVQNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERPSPNTHPKRFVSFCRVGTGLSDDELEAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFSAPYCLRFPRIDRVRYGKAWHECLDVQSFIELVQSSNGTTQRDTEYGNKKGSKQKQTKSSTKGEKKNMLIVPSHLSQTDVSSVKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHYTWVLDCYAQKKLIRLQPKYFLFLSEETKKKLQEEIDEFSDSYYLDLNLEDIKQLLGNINRSEDVSTVDHYRKKYCPKDKWSVFNGCSIYFRNIMSSLKEDWQYLLELSLKRLKLEVLMGGGKFTSNINFATHVVALFIPSYHTNHEEEIQSSFTSVERKLLRIKRLHVVNSKWLEDCLNSCQRLSEDTYSLKSFEIEESTAEDCGHDLAVDAHMVEDNVENQNESFSNKVSKQSSAKAASQDSLALASQGTRGQRKRGRPAAGKGIKKIKTDGNQARRARSQITKKRAKISEYESDESDSLEKRPYEQEADIKEGSAGFHNEQLEPHETEETHNVQSTEGVEDLNVNQHENMLATEIEMNDVRNDEQSSQATEKLEIMTDPMQAMLLDMIPSLAMSKVEQPTNRRVEEEKRPETSTNIEPSTSKKKKVSFKAMAANLLNDW 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1044g00006 1172 SUPERFAMILY BRCT domain 667 752 IPR036420 -
Vivi1044g00006 1172 Pfam BRCT domain, a BRCA1 C-terminus domain 666 748 IPR001357 -
Vivi1044g00006 1172 ProSitePatterns ATP-dependent DNA ligase signature 2. 429 453 IPR016059 GO:0003909
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 617 644 - -
Vivi1044g00006 1172 Gene3D BRCT domain 809 922 IPR036420 -
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 952 1039 - -
Vivi1044g00006 1172 Pfam ATP dependent DNA ligase C terminal region 478 594 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vivi1044g00006 1172 ProSiteProfiles BRCT domain profile. 809 922 IPR001357 -
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 1016 1039 - -
Vivi1044g00006 1172 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi1044g00006 1172 NCBIfam ATP-dependent DNA ligase 61 611 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 1132 1146 - -
Vivi1044g00006 1172 Gene3D BRCT domain 678 791 IPR036420 -
Vivi1044g00006 1172 ProSiteProfiles BRCT domain profile. 663 751 IPR001357 -
Vivi1044g00006 1172 ProSiteProfiles ATP-dependent DNA ligase family profile. 351 490 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi1044g00006 1172 Pfam ATP dependent DNA ligase domain 226 453 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi1044g00006 1172 FunFam DNA ligase 678 792 - -
Vivi1044g00006 1172 CDD Adenylation_DNA_ligase_IV 214 458 IPR044125 GO:0005524
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 624 640 - -
Vivi1044g00006 1172 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 454 - -
Vivi1044g00006 1172 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi1044g00006 1172 SUPERFAMILY BRCT domain 804 924 IPR036420 -
Vivi1044g00006 1172 Coils Coil 1007 1027 - -
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 1126 1158 - -
Vivi1044g00006 1172 CDD BRCT_DNA_ligase_IV_rpt1 667 753 - -
Vivi1044g00006 1172 PANTHER DNA LIGASE 4 3 1164 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vivi1044g00006 1172 FunFam DNA ligase 456 617 - -
Vivi1044g00006 1172 SUPERFAMILY Nucleic acid-binding proteins 461 612 IPR012340 -
Vivi1044g00006 1172 CDD OBF_DNA_ligase_IV 460 604 - -
Vivi1044g00006 1172 Gene3D DNA ligase/mRNA capping enzyme 220 455 - -
Vivi1044g00006 1172 MobiDBLite consensus disorder prediction 952 981 - -
Vivi1044g00006 1172 FunFam DNA ligase 1 218 - -
Vivi1044g00006 1172 Gene3D - 456 617 IPR012340 -
Vivi1044g00006 1172 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi1044g00006 1172 SMART BRCT_7 665 741 IPR001357 -
Vivi1044g00006 1172 SMART BRCT_7 818 912 IPR001357 -
Vivi1044g00006 1172 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1044g00006 214 613 Core DNA Replication Machinery Family AT1G08130 27.119 2.93e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1044g00006 K10777 - gmx:100816002 1802.72