Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1044g00003 ATGGAGAATATTGGTGAAGAGTACAAACATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGTGGCAGCTGGGGATTGGATGAAGCACTTTCAGGGTACTATGACTCAAGCTCCCCTGATGGTGCAGCTTCATCAACAGCTTCATCTAAGAATATTGTTTCTGAAAGGAATAGAAGAAATAAACTCAACCAAAGACTCTTTGCACTTAGAGCAGTAGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATAATTAAGGATGCAATTGAGTACATACAACACTTGCAAGAACAAAAAAAGATTCTTGAAGCTGACATAATGGAACTTCAATCTGGGATGCCAAATAATATTAATCCAAGTTATGAGTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTTTATGATTCTGTCAGTTCAACAAACTCTCCAATTGAAATCCATGAGCTTAGGGTTACATACATGGGAGAAAATACAATTGTTGTAAGCTTGACATGCAGCAAAAGGACTGACACTATGGTTAAACTGTGTGAATTGTTCGAATCTTTGAACCATAAAATTATCACTGCCAATATCACCTGTTTTTCAGGCACACTTTTGAAGACGGTCTTCATTCAGGCCAATGAAGAAGATAAAGATCTATTGCAGATACAGATCCAAACAGCCATTGAAGCTCTTAATGATCCTCCAAGTCCTATGAGCATCTATTGA 744 0.3844 MENIGEEYKHYWETNMFLQTQELDSGSWGLDEALSGYYDSSSPDGAASSTASSKNIVSERNRRNKLNQRLFALRAVVPNISKMDKASIIKDAIEYIQHLQEQKKILEADIMELQSGMPNNINPSYEFDQELPVLLRSKKKRTDQFYDSVSSTNSPIEIHELRVTYMGENTIVVSLTCSKRTDTMVKLCELFESLNHKIITANITCFSGTLLKTVFIQANEEDKDLLQIQIQTAIEALNDPPSPMSIY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1044g00003 247 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 235 - -
Vivi1044g00003 247 Gene3D - 49 121 IPR036638 GO:0046983
Vivi1044g00003 247 SMART finulus 56 105 IPR011598 GO:0046983
Vivi1044g00003 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 116 IPR036638 GO:0046983
Vivi1044g00003 247 Pfam Helix-loop-helix DNA-binding domain 57 100 IPR011598 GO:0046983
Vivi1044g00003 247 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 116 - -
Vivi1044g00003 247 Coils Coil 89 116 - -
Vivi1044g00003 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1044g00003 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 62.844 7.80e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1044g00003 HLH 8.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1044g00003 - - gmx:100817978 388.267