Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1044g00002 ATGGAGAATATTGGTGAAGAGTACAAACATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGCTGGGGATTGGATGAAGCACTTTCAGGGTACTATGACTCAAGCTCCCCTGATGGTGCAGCTTCATCAACAGCTTCATCTAAGAATATTGTTTCTGAAAGGAATAGAAGAAATAAACTCAACCAAAGACTCTTTGCACTTAGAGCAGTAGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATAATTAAGGATGCAATTGAGTACATACAACACTTGCAAGAACAAAAAAAGATTCTTGAAGCTGACATAATGGAACTTCAATCTGGGATGCCAAATAATATTAATCCAAGTTATGAGTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTTTATGATTCTGTCAGTTCAACAAACTCTCCAATTGAAATCCATGAGCTTAGGGTTACATACATGGGAGAAAATACAATTGTTGTAAGCTTGACATGCAGCAAAAGGACTGACACTATGGTTAAACTGTGTGAATTGTTCGAATCTTTGAACCATAAAATTATCACTGCCAATATCACCTGTTTTTCAGGCACACTTTTGAAGACGGTCTTCATTCAGGCCAATGAAGAAGATAAAGATCTATTGCAGATACAGATCCAAACAGCCATTGAAGCTCTTAATGATCCTCCAAGTCCTATGAGCATCTATTGA 738 0.3821 MENIGEEYKHYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSTASSKNIVSERNRRNKLNQRLFALRAVVPNISKMDKASIIKDAIEYIQHLQEQKKILEADIMELQSGMPNNINPSYEFDQELPVLLRSKKKRTDQFYDSVSSTNSPIEIHELRVTYMGENTIVVSLTCSKRTDTMVKLCELFESLNHKIITANITCFSGTLLKTVFIQANEEDKDLLQIQIQTAIEALNDPPSPMSIY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1044g00002 245 Gene3D - 47 119 IPR036638 GO:0046983
Vivi1044g00002 245 SMART finulus 54 103 IPR011598 GO:0046983
Vivi1044g00002 245 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Vivi1044g00002 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Vivi1044g00002 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 40 233 - -
Vivi1044g00002 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 114 - -
Vivi1044g00002 245 Coils Coil 87 114 - -
Vivi1044g00002 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 114 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1044g00002 1 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.761 2.66e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1044g00002 HLH 8.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1044g00002 - - gmx:100817978 393.275