Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1044g00001 ATGGAGAATATTGATCAAGAGTACAAACGTTTCTTGGAGAACAGCATGTTTCCCCAAAACCAAGACATTGATAGCTGGGGATTGGATGAGGCACTTTCAGGGTACTATGACTCAAGCTCTCCTGATGGTGCAGCTTCATCTAAGAACATTGTTTCTGAAAGGAATAGAAGAAATAAACTCAATAAAAAACTCTTGGAACTTAGAGCAGTGGTCCCTAATATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTATATACAACACTTGCAAGAACAAGAGAAGATTCTTGAAGCTGAGATAATGGTACTTGAATCTGAGATGCCAAATAATATTAATTCAAGTTATGATTTAGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTATATGATTCTGTCAGTTCAAGAAACTCTCCAATTGAACTTCTTGAGCTTAGGGTTAAATGCATGGAAGAAAATACAATACTTGTGAGCTTGACATGTACCCAAAGGACAGACACTATGGTTCAATTATATGAAGTGTTCGAATCTTTGAACCTCAAAATTATCACTGCCAATATCACTTGTTCTTCTGGCAAACTTATGAAGACAGTCTTAATCCAGGCAAATGAAGAAGACAAAGATCTATTGCAGATTAAGATCCAAACAGCTATTGCAGCTCGCAATGATCCTCTAAGTCCCATGAGTATCTAA 723 0.3679 MENIDQEYKRFLENSMFPQNQDIDSWGLDEALSGYYDSSSPDGAASSKNIVSERNRRNKLNKKLLELRAVVPNISKMDKASIIKDAIEYIQHLQEQEKILEAEIMVLESEMPNNINSSYDLDQELPVLLRSKKKRTDQLYDSVSSRNSPIELLELRVKCMEENTILVSLTCTQRTDTMVQLYEVFESLNLKIITANITCSSGKLMKTVLIQANEEDKDLLQIKIQTAIAARNDPLSPMSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1044g00001 240 Gene3D - 44 118 IPR036638 GO:0046983
Vivi1044g00001 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 225 - -
Vivi1044g00001 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 111 IPR036638 GO:0046983
Vivi1044g00001 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Vivi1044g00001 240 Pfam Helix-loop-helix DNA-binding domain 51 94 IPR011598 GO:0046983
Vivi1044g00001 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 42 110 - -
Vivi1044g00001 240 Coils Coil 83 110 - -
Vivi1044g00001 240 Coils Coil 50 70 - -
Vivi1044g00001 240 SMART finulus 50 99 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1044g00001 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.829 1.07e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1044g00001 HLH 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1044g00001 - - gmx:100817978 330.487