Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1041g00009 ATGGGGGAAGAGATAAGAACAGACGAAGAGCGAGTATCGGAGTGGGAAAAGGGTCTACCCACCTTTCACGATCTCACTCCTCTCACCATGGCGTTAATCCCGCCGGAGCTAGCTTCCGCCTTCAGCATCTCCCCGGAGCCTCACCGCACACTCATCGACGTCAACCGCGCCTCCCGCAACACTCTCTCTATCCTCCGCGGCGGCGGAACAAGTCATCACCAAACGTTCTCATCCAACCACGACGAGCCTCTCGAAGAAGACGAAGAAATGGAAGAGGAAACCGATCGGGACGGCTCCGGTTCGGATTCGCGAAAGCACCGGAAGATCGATTCGGTTTCGGTTACAGAGGAAGCGGATTCGGCGGTTAGAACAGAGACGACGCTAAAACGGCCGCGTTTAGTGTGGACTCCGCAGCTTCACAAGAGATTCGTCGACGTTGTGGCGCATCTCGGGATAAAGAACGCGGTTCCGAAAACGATTATGCAGTTGATGAATGTGGAAGGGTTAACACGAGAGAATGTTGCTAGTCATTTGCAGAAGTATCGGCTTTATTTGAAGAGGATGCAAGGTCTTTCCAACGACGCTCCTTCTTCTTCTGATCATCTTTTTGCTTCTACTCCTGTTCCTCAGAGTTTGCATGAATCTGCTTCTGCTGTGAATTCTCATGCTCATTCACATGCTCATTCTCATGCTCATTCGCATGCTCATTCTCATTCGCAATCGAATGGACATGGGAATTCGCAATCGCATCATTCCGTTACGATTTCTATGCCTTATCCGCCGCCGCCCCCGCCGATGATGTCTATGCCTTTAATTGGTATGCCGCCGCATCCGCATGGTCATATGGGAATGGCTTTGCATCCTCCTTCTGGTTCTTCTTCGTACCGGTCGCATCCATTTAATATGATGCATCATAGGGATTGGCCTCCTCATCCTCACTCTCACTCTCACCCTCATATTTCTCCTAATGATAGTAATAAATAG 984 0.5041 MGEEIRTDEERVSEWEKGLPTFHDLTPLTMALIPPELASAFSISPEPHRTLIDVNRASRNTLSILRGGGTSHHQTFSSNHDEPLEEDEEMEEETDRDGSGSDSRKHRKIDSVSVTEEADSAVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHESASAVNSHAHSHAHSHAHSHAHSHSQSNGHGNSQSHHSVTISMPYPPPPPPMMSMPLIGMPPHPHGHMGMALHPPSGSSSYRSHPFNMMHHRDWPPHPHSHSHPHISPNDSNK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 192 224 - -
Vivi1041g00009 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 186 IPR017930 -
Vivi1041g00009 327 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 8 288 IPR044841 GO:0003700|GO:0006355
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 238 255 - -
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 82 96 - -
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 256 272 - -
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 64 118 - -
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 300 320 - -
Vivi1041g00009 327 Pfam Myb-like DNA-binding domain 134 182 IPR001005 -
Vivi1041g00009 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Vivi1041g00009 327 Gene3D - 126 189 - -
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 97 114 - -
Vivi1041g00009 327 FunFam Two-component response regulator 126 189 - -
Vivi1041g00009 327 SUPERFAMILY Homeodomain-like 127 187 IPR009057 -
Vivi1041g00009 327 MobiDBLite consensus disorder prediction 192 327 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1041g00009 1 214 G2-like Transcription Factor Family AT3G46640 60.251 4.77e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1041g00009 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1041g00009 - - vvo:131639158 511.531