Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1041g00005 ATGAGTTTTGCTTTTCGAGGGAGTAGGGGTGATATCGAAAGCGGGTTTTCGGAATATGTTCCTGAAAGAACCTCAATGCGAGTTCATCCATCCCGGTCTGCTAATAGCAATTCTCTAGCTTTTCTTGTTACGGTTATTTTGATATTCATGATATTAAACTCCCCTCAGATGTCGCATTATTTTCTGCTCTGGGTAATACTGGCTGTCTTCGTGATGGCTACAGGTCTGAGAATGTATGCAACATGTCAACAACTTCAAGCACAAGCTCGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGTCATGCTGAATTACATTTTCAAATGCCACCATCTATTTCAATTGCAACTAGAGGGAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGAGAATTCGACGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCTTCAATGACTGAGGAAGAGATAAATGCCTTGCCTGTTCACAAGTATAAAGTTCCACGCCCAACAAAAGATGGCTCCACCGGTTTAACATCCTCTTCAGAAGCAGCTGAGATTAAACAAGACTCCAAAGGAGCCGAGAGAAGTGTCAAAGGTTCAGAAGATGAGCTGATATGTACTGTTTGCTTGGACCAAGTTAAGAAAGGGGAGCTTGTGCGAAGCTTGCCGTGCTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTTCGGCAACAAGGAACATGTCCCGTGTGCAAATTTAGGATGGGGTCAGGAAGGCAGGGAAACACCGATAGCGAGTCTGGTGATTCAGATATTTTGTAA 825 0.4497 MSFAFRGSRGDIESGFSEYVPERTSMRVHPSRSANSNSLAFLVTVILIFMILNSPQMSHYFLLWVILAVFVMATGLRMYATCQQLQAQARAHAAAASGLLGHAELHFQMPPSISIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTPSMTEEEINALPVHKYKVPRPTKDGSTGLTSSSEAAEIKQDSKGAERSVKGSEDELICTVCLDQVKKGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRMGSGRQGNTDSESGDSDIL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1041g00005 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 259 IPR013083 -
Vivi1041g00005 274 MobiDBLite consensus disorder prediction 178 192 - -
Vivi1041g00005 274 SMART ring_2 212 252 IPR001841 -
Vivi1041g00005 274 CDD RING-H2_PA-TM-RING 212 253 - -
Vivi1041g00005 274 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Vivi1041g00005 274 Pfam Ring finger domain 212 253 IPR001841 -
Vivi1041g00005 274 MobiDBLite consensus disorder prediction 149 201 - -
Vivi1041g00005 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Vivi1041g00005 274 SUPERFAMILY RING/U-box 207 256 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1041g00005 1 274 C3H Transcription Factor Family AT3G55530 68.478 1.09e-122 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1041g00005 K16283 - gmx:100805406 416.772