Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1041g00004 ATGATATTAAACTCCCCTCAGATGTCGCATTATTTTCTGCTCTGGGTAATACTGGCTGTCTTCGTGATGGCTACAGGTCTGAGAATGTATGCAACATGTCAACAACTTCAAGCACAAGCTCGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGTCATGCTGAATTACATTTTCAAATGCCACCATCTATTTCAATTGCAACTAGAGGGAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGAGAATTCGACGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCTTCAATGACTGAGGAAGAGATAAATGCCTTGCCTGTTCACAAGTATAAAGTTCCACGCCCAACAAAAGATGGCTCCACCGGTTTAACATCCTCTTCAGAAGCAGCTGAGATTAAACAAGACTCCAAAGGAGCCGAGAGAAGTGTCAAAGGTTCAGAAGATGAGCTGATATGTACTGTTTGCTTGGACCAAGTTAAGAAAGGGGAGCTTGTGCGAAGCTTGCCGTGCTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTTCGGCAACAAGGAACATGTCCCGTGTGCAAATTTAGGATGGGGTCAGGAAGGCAGGGAAACACCGATAGCGAGTCTGGTGATTCAGATATTTTGTAA 678 0.4572 MILNSPQMSHYFLLWVILAVFVMATGLRMYATCQQLQAQARAHAAAASGLLGHAELHFQMPPSISIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTPSMTEEEINALPVHKYKVPRPTKDGSTGLTSSSEAAEIKQDSKGAERSVKGSEDELICTVCLDQVKKGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRMGSGRQGNTDSESGDSDIL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1041g00004 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 210 IPR013083 -
Vivi1041g00004 225 CDD RING-H2_PA-TM-RING 163 204 - -
Vivi1041g00004 225 PANTHER TARGET OF ERK KINASE MPK-1 1 210 - -
Vivi1041g00004 225 Pfam Ring finger domain 163 204 IPR001841 -
Vivi1041g00004 225 SMART ring_2 163 203 IPR001841 -
Vivi1041g00004 225 MobiDBLite consensus disorder prediction 101 152 - -
Vivi1041g00004 225 MobiDBLite consensus disorder prediction 129 143 - -
Vivi1041g00004 225 SUPERFAMILY RING/U-box 158 208 - -
Vivi1041g00004 225 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1041g00004 1 225 C3H Transcription Factor Family AT3G55530 67.699 6.10e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1041g00004 K16283 - gmx:100805406 333.569