LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1040g00019	ATGAAGCCAAAAATGATCCAATTTCAGACTAAAGGGAAACTGTTTGATTTTGAGGTTGAAGCTGTAAGTCCTCTTGAGCATCACGGCGGTAATGCTAGTTGCAGTTGTGTTTTCAGAGACATAAATATGCACAGACTACTGCAAGACAGAAGTTGTGATGTTTTCAGAAATAATTACACTCTTCCTCCCACACCTCACTTTGTTTCTTTTCATATAGAAACTTACACAATCTTGTTCACGTGCAACCGTAGCCTCCATGTCAACCCTCCAACATATATACATAACTATACAAACTGTCCTCTCTATGATTTCTACTACCAGCCTCACATCGATACTGATAAAGAGTCTTGGAGTGCTTTTAAAACATGTGCAAATGTCCGACTTCCGATTAAAGACCTCGCTGACTCTGAAGACCCTTTTACTTTTGTAACTGCTGATATCACAACTCAAGTTAGCATAACAGAGGAATGTGCAAATTGTCACTACAACCAAAGAGGACGGTGTCAACTTGACGGCAACGGAAGGTTTTTTTGTGCCAATGCTATGGTGGCAAAACAAAAAGGGCTGAGGTGGAATGTTAAACTGGGTATAGCTATGATGGTGACTATTGGAGTTGCAGTGCTGATGTTGTTGGCTTATTGTTTACGAACAAAGATCTTTAGTGCAGCATTTCTTTTGTTCAGGAAGGAAGATTCAACTCATCATATTATTGAGGAGTATATGAAAGAACATGGACCTCTTCCTGTTGCAGCTAGGTACAGTTATTCAGATATAAAAAAGATAACAAACTCTTTCAAAAACAAATTAGGCCAAGGAGGGTATGGAAGTGTATACAAAGGGAAATTACATGATGAGCGTAATGTTGCAGTGAAGATTTTAAGTGAATCAAAAGGTGAAGGTGAGGATTTCATCAATGAAGTTGCGAGTATCAGTAGAACTTCACATGTCAATGTTGTTAGGCTTTTGGGGTTTTGTTTGGACGGTTCTAAAAAGGCGCTAATATATGAATTTATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGAGAAAAATCCACTGCAAGATGATCGACATTTGGCTTGCAAATCATTGTATGATATTGTAGTTGGCGTTGCTCAAGGATTAGAGTATTTACACAGAGGCTGCAACACTAGAATCTTACACTTTGACATAAAACCTCATAATATATTACTAGATGATGATTTTTGTCCAAAAATTTCTGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATCTTTGGTGCAAGGGGAACACCAGGATATATTGCTCCTGAGTTGTTTTCCAGAAGTTTTGGTAGTGTGTCACATAAATCAGATGTCTATAGTTATGGAATGATGGTTTTAGAGATGGTTGGACGAAGAAAGAACATTAAGGTTGAAGTTGATTGTTCTAGTGAGTTATACTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTTAGGTGTATTAACAATGAAGTTGATGAAGAAATGGTAAGAAAAATGACAGTGGTAAGTTTATGGTGCATACAAACCAATCCTTCAAATCGACCATCGATGCATAAAGTGGTGGAAATGTTGGAAGGGAGTCTTCAAGGGTTGGAAATGCCACCCAAACCCTTTTTGTCTTCTCCTTCAGTATCTCCAACCAATTCGTCATCTGAAATATTATAA	1707	0.3767	MKPKMIQFQTKGKLFDFEVEAVSPLEHHGGNASCSCVFRDINMHRLLQDRSCDVFRNNYTLPPTPHFVSFHIETYTILFTCNRSLHVNPPTYIHNYTNCPLYDFYYQPHIDTDKESWSAFKTCANVRLPIKDLADSEDPFTFVTADITTQVSITEECANCHYNQRGRCQLDGNGRFFCANAMVAKQKGLRWNVKLGIAMMVTIGVAVLMLLAYCLRTKIFSAAFLLFRKEDSTHHIIEEYMKEHGPLPVAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERNVAVKILSESKGEGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKNPLQDDRHLACKSLYDIVVGVAQGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSIFGARGTPGYIAPELFSRSFGSVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLRCINNEVDEEMVRKMTVVSLWCIQTNPSNRPSMHKVVEMLEGSLQGLEMPPKPFLSSPSVSPTNSSSEIL	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1040g00019	568	Gene3D	Phosphorylase Kinase; domain 1	237	337	-	-
	Vivi1040g00019	568	ProSiteProfiles	Protein kinase domain profile.	263	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00019	568	SMART	serkin_6	263	538	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00019	568	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	234	557	IPR045874	GO:0004672
	Vivi1040g00019	568	FunFam	serine/threonine-protein kinase PBS1-like	231	337	-	-
	Vivi1040g00019	568	Gene3D	Transferase(Phosphotransferase) domain 1	338	550	-	-
	Vivi1040g00019	568	ProSitePatterns	Protein kinases ATP-binding region signature.	269	291	IPR017441	GO:0005524
	Vivi1040g00019	568	Pfam	Protein kinase domain	266	536	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00019	568	SUPERFAMILY	Protein kinase-like (PK-like)	247	539	IPR011009	-
	Vivi1040g00019	568	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	387	399	IPR008271	GO:0004672\|GO:0006468
	Vivi1040g00019	568	FunFam	PR5-like receptor kinase	338	550	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1040g00019	198	554	Receptor kinase-like Gene Family	AT4G18250	53.425	3.54e-125	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vivi1040g00019		Pkinase	4.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1040g00019	-		-	vvo:131610157	766.148