LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1040g00018	ATGAAGACTTGGCTTATATTATCAACTGTTTTAGCACTTAAATGTATTAGTTATTTATTCATGATGGCCTTAGTTTACAAATTTCTTATCTTTTTGTTTTCTCAACTTATGCTACTTGGTAATGGGTACCAAGAAGATTGTCCAGCTTCATTTATTTGTGGATACCTTGGCAATATCAGCTTTCCTTTTACTACAATACAACACCAGGATTGTGGCTTATTACCAATACATAATTGTTATGATCCTAAGAAGCCCAAAATGATCCAATTTCTGGATAAGGGGAAATGGTTTGAGGTTGGAATTGTAAATCCTCTTGAGTTTCGCGGTGGTAATGCTACTAGTACTTGTGTTTTCAGAGACGGTAATCTCTACAAACAGCTGCATGACAAAAATTGTGAAGCTTTCAAACATAATTATACTCTTCCTCCTACCTCTCACTTTGTTTCTTTTCATATGGAATTTCATACAACCTTGTTCATGTGCAACCGTTCCCTGCGTATAAACCCTCCAAAATCTATGTATAAGTATACACACTGCCCTCTCTATGATTTCTACTACCAGCCTTACAATAGTGGTGATATTGCATCTCGGAGTGCTTTTACAGCTTGTACAAAGGCCCTGCTTCCGGCTAAAGACTTTGCTGACACCGACAACCCTTTTACTTTTGTAACAGCTGATATTTATACTCAAGTAAACATAACAGAGGAGTGTGCAAATTGTCACTACAACCAAAATGGACGGTGTCAAGTTGACAGCAAAGGAAGGTTTTATTGTGCCAACGTTATGGATGCAAAGCAAAAAGGGCCGCAGTGGATTGTTAAACTGGGTATAGCAATTGGAGTTGCAGTGCTGATTATTGGAGTTGCAGTGCTGATGTTGTTGGCTTATTGTTTAAGGACAAAGATCTTCACTACAACAATTCTTTTGTTCAAGAGAAAAAATTCAACTAATCATATTATTGAGGAGTTTTTGAAAGAACATGGACCTCTTCCAGCTGCTAGGTATAATTATTCAGATATCAAGAAAATAACAAACTCTTTCAAAAACAAATTAGGCCAAGGAGGATATGGAAGTGTATACAAAGGGAAGTTACATGATGAGCGCAATGTTGCAGTGAAGATTTTAAGTGAATCAAAAGGTGAAGGTGAAGATTTCATTAACGAAGTTGCAAGTATTAGTAGAACATCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAAGCGCTAATATACGAATTCATGCCTAATGGATCTCTTGAAAAGTTCATATATGAAGACAAAAATCCAGTGCAGGATGATCATCAGTTGGATTGCAACACTTTGTATCATATTGTAGTTGGCGTTGCTCGCGGATTAGAGTACTTGCACCGAGGTTGCAACACAAGAATCTTGCATTTTGACATAAAGCCTCATAATATATTGCTAGATGATGAATTTTGTCCTAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAAAAAAGAAAGCATTGTATCAATAATTGGTGCAAGGGGAACACCGGGATATATTGCTCCAGAGTTGTTTTCCAGAAATTTTGGTGGCGTGTCACATAAGTCAGACGTCTACAGTTATGGAATGATGGTTTTAGAGATGGTTGGTCGAAGAAAGAATATTAAGGTTGAAGTTGATTGTTCTAGCGAGCTATACTTTCCACATTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTTGGGTGTATTAAAAATGAGATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACGAACCCTTTGAATCGACCATCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAACCTTCAAGTGCTTGATATACCACCCAAACCCTTTTTGTCTTCTCCTTCAACATCTCCAACCCATTTATCATCTGAAATATTGTAA	1953	0.3687	MKTWLILSTVLALKCISYLFMMALVYKFLIFLFSQLMLLGNGYQEDCPASFICGYLGNISFPFTTIQHQDCGLLPIHNCYDPKKPKMIQFLDKGKWFEVGIVNPLEFRGGNATSTCVFRDGNLYKQLHDKNCEAFKHNYTLPPTSHFVSFHMEFHTTLFMCNRSLRINPPKSMYKYTHCPLYDFYYQPYNSGDIASRSAFTACTKALLPAKDFADTDNPFTFVTADIYTQVNITEECANCHYNQNGRCQVDSKGRFYCANVMDAKQKGPQWIVKLGIAIGVAVLIIGVAVLMLLAYCLRTKIFTTTILLFKRKNSTNHIIEEFLKEHGPLPAARYNYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERNVAVKILSESKGEGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEDKNPVQDDHQLDCNTLYHIVVGVARGLEYLHRGCNTRILHFDIKPHNILLDDEFCPKISDFGLAKICPKKESIVSIIGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLGCIKNEIDEEMVRKMTVVSLWCIQTNPLNRPSMHKVVEMLEGNLQVLDIPPKPFLSSPSTSPTHLSSEIL	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1040g00018	650	FunFam	PR5-like receptor kinase	420	632	-	-
	Vivi1040g00018	650	Gene3D	Phosphorylase Kinase; domain 1	322	419	-	-
	Vivi1040g00018	650	ProSiteProfiles	Protein kinase domain profile.	345	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00018	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Vivi1040g00018	650	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	317	638	IPR045874	GO:0004672
	Vivi1040g00018	650	Pfam	Protein kinase domain	348	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00018	650	SMART	serkin_6	345	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00018	650	ProSitePatterns	Protein kinases ATP-binding region signature.	351	373	IPR017441	GO:0005524
	Vivi1040g00018	650	Gene3D	Transferase(Phosphotransferase) domain 1	420	633	-	-
	Vivi1040g00018	650	SUPERFAMILY	Protein kinase-like (PK-like)	329	621	IPR011009	-
	Vivi1040g00018	650	FunFam	serine/threonine-protein kinase PBS1-like	313	419	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1040g00018	226	647	Receptor kinase-like Gene Family	AT5G38260	47.653	8.29e-128	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vivi1040g00018		Pkinase	5.7e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1040g00018	-		-	vvo:131610174	819.69