LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1040g00017	ATGAAGACTTGGCTTATATTATCAACTGTTTTAGCACTTAAATGTATTAGTTATTTATTCATGATGGCCTTAGTTTACAAATTTCTTATCTTTTTGTTTTCTCAACTTATGCTACTTGGTAATGGGTACCAAGAAGATTGTCCAGCTTCATTTATTTGTGGATACCTTGGCAATATCAGCTTTCCTTTTACTACAATACAACACCAGGATTGTGGCTTATTACCAATACATAATTGTTATGATCCTAAGAAGCCCAAAATGATCCAATTTCTGGATAAGGGGAAATGGTTTGAGGTTGGAATTGTAAATCCTCTTGAGTTTCGCGGTGGTAATGCTACTAGTACTTGTGTTTTCAGAGACGGTAATCTCTACAAACAGCTGCATGACAAAAATTGTGAAGCTTTCAAACATAATTATACTCTTCCTCCTACCTCTCACTTTGTTTCTTTTCATATGGAATTTCATACAACCTTGTTCATGTGCAACCGTTCCCTGCGTATAAACCCTCCAAAATCTATGTATAAGTATACACACTGCCCTCTCTATGATTTCTACTACCAGCCTTACAATAGTGGTGATATTGCATCTCGGAGTGCTTTTACAGCTTGTACAAAGGCCCTGCTTCCGGCTAAAGACTTTGCTGACACCGACAACCCTTTTACTTTTGTAACAGCTGATATTTATACTCAAGTAAACATAACAGAGGAGTGTGCAAATTGTCACTACAACCAAAATGGACGGTGTCAAGTTGACAGCAAAGGAAGGTTTTATTGTGCCAACGTTATGGATGCAAAGCAAAAAGGGCCGCAGTGGATTGTTAAACTGGGTATAGTGCTGATTATTGGAGTTGCAGTGCTGATGTTGTTGGCTTATTGTTTAAGGACAAAGATCTTCACTACAACAATTCTTTTGTTCAAGAGAAAAAATTCAACTAATCATATTATTGAGGAGTTTTTGAAAGAACATGGACCTCTTCCAGCTGCTAGGTATAATTATTCAGATATCAAGAAAATAACAAACTCTTTCAAAAACAAATTAGGCCAAGGAGGATATGGAAGTGTATACAAAGGGAAGTTACATGATGAGCGCAATGTTGCAGTGAAGATTTTAAGTGAATCAAAAGGTGAAGGTGAAGATTTCATTAACGAAGTTGCAAGTATTAGTAGAACATCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAAGCGCTAATATACGAATTCATGCCTAATGGATCTCTTGAAAAGTTCATATATGAAGACAAAAATCCAGTGCAGGATGATCATCAGTTGGATTGCAACACTTTGTATCATATTGTAGTTGGCGTTGCTCGCGGATTAGAGTACTTGCACCGAGGTTGCAACACAAGAATCTTGCATTTTGACATAAAGCCTCATAATATATTGCTAGATGATGAATTTTGTCCTAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAAAAAAGAAAGCATTGTATCAATAATTGGTGCAAGGGGAACACCGGGATATATTGCTCCAGAGTTGTTTTCCAGAAATTTTGGTGGCGTGTCACATAAGTCAGACGTCTACAGTTATGGAATGATGGTTTTAGAGATGGTTGGTCGAAGAAAGAATATTAAGGTTGAAGTTGATTGTTCTAGCGAGCTATACTTTCCACATTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTTGGGTGTATTAAAAATGAGATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACGAACCCTTTGAATCGACCATCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAACCTTCAAGTGCTTGATATACCACCCAAACCCTTTTTGTCTTCTCCTTCAACATCTCCAACCCATTTATCATCTGAAATATTGTAA	1938	0.3679	MKTWLILSTVLALKCISYLFMMALVYKFLIFLFSQLMLLGNGYQEDCPASFICGYLGNISFPFTTIQHQDCGLLPIHNCYDPKKPKMIQFLDKGKWFEVGIVNPLEFRGGNATSTCVFRDGNLYKQLHDKNCEAFKHNYTLPPTSHFVSFHMEFHTTLFMCNRSLRINPPKSMYKYTHCPLYDFYYQPYNSGDIASRSAFTACTKALLPAKDFADTDNPFTFVTADIYTQVNITEECANCHYNQNGRCQVDSKGRFYCANVMDAKQKGPQWIVKLGIVLIIGVAVLMLLAYCLRTKIFTTTILLFKRKNSTNHIIEEFLKEHGPLPAARYNYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERNVAVKILSESKGEGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEDKNPVQDDHQLDCNTLYHIVVGVARGLEYLHRGCNTRILHFDIKPHNILLDDEFCPKISDFGLAKICPKKESIVSIIGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLGCIKNEIDEEMVRKMTVVSLWCIQTNPLNRPSMHKVVEMLEGNLQVLDIPPKPFLSSPSTSPTHLSSEIL	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1040g00017	645	FunFam	PR5-like receptor kinase	415	627	-	-
	Vivi1040g00017	645	Gene3D	Transferase(Phosphotransferase) domain 1	415	628	-	-
	Vivi1040g00017	645	SUPERFAMILY	Protein kinase-like (PK-like)	324	616	IPR011009	-
	Vivi1040g00017	645	Pfam	Protein kinase domain	343	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00017	645	ProSiteProfiles	Protein kinase domain profile.	340	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00017	645	FunFam	serine/threonine-protein kinase PBS1-like	308	414	-	-
	Vivi1040g00017	645	SMART	serkin_6	340	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00017	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Vivi1040g00017	645	Gene3D	Phosphorylase Kinase; domain 1	317	414	-	-
	Vivi1040g00017	645	ProSitePatterns	Protein kinases ATP-binding region signature.	346	368	IPR017441	GO:0005524
	Vivi1040g00017	645	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	312	633	IPR045874	GO:0004672

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1040g00017	226	642	Receptor kinase-like Gene Family	AT5G38260	48.219	1.32e-126	386

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vivi1040g00017		Pkinase	5.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1040g00017	-		-	vvo:131610174	818.15