LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1040g00016	ATGAAGACTTGGCTTATATTATCAACTGTTTTAGCACTTAAATGTATTAGTTATTTATTCATGATGGCCTTAGTTTACAAATTTCTTATCTTTTTGTTTTCTCAACTTATGCTACTTGGTAATGGGTACCAAGAAGATTGTCCAGCTTCATTTATTTGTGGATACCTTGGCAATATCAGCTTTCCTTTTACTACAATACAACACCAGGATTGTGGCTTATTACCAATACATAATTGTTATGATCCTAAGAAGCCCAAAATGATCCAATTTCTGGATAAGGGGAAATGGTTTGAGGTTGGAATTGTAAATCCTCTTGAGTTTCGCGGTGGTAATGCTACTAGTACTTGTGTTTTCAGAGACGGTAATCTCTACAAACAGCTGCATGACAAAAATTGTGAAGCTTTCAAACATAATTATACTCTTCCTCCTACCTCTCACTTTGTTTCTTTTCATATGGAATTTCATACAACCTTGTTCATGTGCAACCGTTCCCTGCGTATAAACCCTCCAAAATCTATGTATAAGTATACACACTGCCCTCTCTATGATTTCTACTACCAGCCTTACAATAGTGGTGATATTGCATCTCGGAGTGCTTTTACAGCTTGTACAAAGGCCCTGCTTCCGGCTAAAGACTTTGCTGACACCGACAACCCTTTTACTTTTGTAACAGCTGATATTTATACTCAAGTAAACATAACAGAGGAGTGTGCAAATTGTCACTACAACCAAAATGGACGGTGTCAAGTTGACAGCAAAGGAAGGTTTTATTGTGCCAACGGTATTCTAACAAACACCCTGAAATCACACCGCACACATAAATGCATTGCACCCTATTTTCCCTACACAACTTTATTTTCATCTGTCAAATCTGAATTGTTTACTCTATTTGCAGTTATGGATGCAAAGCAAAAAGGGCCGCAGTGGATTGTTAAACTGGGTATAGCAATTGGAGTTGCAGTGCTGATTATTGGAGTTGCAGTGCTGATGTTGTTGGCTTATTGTTTAAGGACAAAGATCTTCACTACAACAATTCTTTTGTTCAAGAGAAAAAATTCAACTAATCATATTATTGAGGAGTTTTTGAAAGAACATGGACCTCTTCCAGCTGCTAGGTATAATTATTCAGATATCAAGAAAATAACAAACTCTTTCAAAAACAAATTAGGCCAAGGAGGATATGGAAGTGTATACAAAGGGAAGTTACATGATGAGCGCAATGTTGCAGTGAAGATTTTAAGTGAATCAAAAGGTGAAGGTGAAGATTTCATTAACGAAGTTGCAAGTATTAGTAGAACATCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAAGCGCTAATATACGAATTCATGCCTAATGGATCTCTTGAAAAGTTCATATATGAAGACAAAAATCCAGTGCAGGATGATCATCAGTTGGATTGCAACACTTTGTATCATATTGTAGTTGGCGTTGCTCGCGGATTAGAGTACTTGCACCGAGGTTGCAACACAAGAATCTTGCATTTTGACATAAAGCCTCATAATATATTGCTAGATGATGAATTTTGTCCTAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAAAAAAGAAAGCATTGTATCAATAATTGGTGCAAGGGGAACACCGGGATATATTGCTCCAGAGTTGTTTTCCAGAAATTTTGGTGGCGTGTCACATAAGTCAGACGTCTACAGTTATGGAATGATGGTTTTAGAGATGGTTGGTCGAAGAAAGAATATTAAGGTTGAAGTTGATTGTTCTAGCGAGCTATACTTTCCACATTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTTGGGTGTATTAAAAATGAGATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACGAACCCTTTGAATCGACCATCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAACCTTCAAGTGCTTGATATACCACCCAAACCCTTTTTGTCTTCTCCTTCAACATCTCCAACCCATTTATCATCTGAAATATTGTAA	2067	0.3682	MKTWLILSTVLALKCISYLFMMALVYKFLIFLFSQLMLLGNGYQEDCPASFICGYLGNISFPFTTIQHQDCGLLPIHNCYDPKKPKMIQFLDKGKWFEVGIVNPLEFRGGNATSTCVFRDGNLYKQLHDKNCEAFKHNYTLPPTSHFVSFHMEFHTTLFMCNRSLRINPPKSMYKYTHCPLYDFYYQPYNSGDIASRSAFTACTKALLPAKDFADTDNPFTFVTADIYTQVNITEECANCHYNQNGRCQVDSKGRFYCANGILTNTLKSHRTHKCIAPYFPYTTLFSSVKSELFTLFAVMDAKQKGPQWIVKLGIAIGVAVLIIGVAVLMLLAYCLRTKIFTTTILLFKRKNSTNHIIEEFLKEHGPLPAARYNYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERNVAVKILSESKGEGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEDKNPVQDDHQLDCNTLYHIVVGVARGLEYLHRGCNTRILHFDIKPHNILLDDEFCPKISDFGLAKICPKKESIVSIIGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLGCIKNEIDEEMVRKMTVVSLWCIQTNPLNRPSMHKVVEMLEGNLQVLDIPPKPFLSSPSTSPTHLSSEIL	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1040g00016	688	FunFam	serine/threonine-protein kinase PBS1-like	351	457	-	-
	Vivi1040g00016	688	Gene3D	Transferase(Phosphotransferase) domain 1	458	671	-	-
	Vivi1040g00016	688	SUPERFAMILY	Protein kinase-like (PK-like)	367	659	IPR011009	-
	Vivi1040g00016	688	ProSitePatterns	Protein kinases ATP-binding region signature.	389	411	IPR017441	GO:0005524
	Vivi1040g00016	688	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	355	676	IPR045874	GO:0004672
	Vivi1040g00016	688	Gene3D	Phosphorylase Kinase; domain 1	360	457	-	-
	Vivi1040g00016	688	Pfam	Protein kinase domain	386	656	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00016	688	FunFam	PR5-like receptor kinase	458	670	-	-
	Vivi1040g00016	688	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	507	519	IPR008271	GO:0004672\|GO:0006468
	Vivi1040g00016	688	ProSiteProfiles	Protein kinase domain profile.	383	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1040g00016	688	SMART	serkin_6	383	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1040g00016	312	685	Receptor kinase-like Gene Family	AT5G38260	52.116	5.90e-127	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vivi1040g00016		Pkinase	6.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1040g00016	-		-	vvo:131634171	760.37