Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1040g00015 ATGAACAAAAGAATCCCTTTGTTTATGACCCTGTTTTGTTTCCTCACCACAACCACTGTATGCTATGTAGATCCAAATTTTGAAGCCTGTGAACCCAAAACATGTGGCAACCAAACTATAACTTACCCTTTCTACATCAAAGGAACACAAGAACCCTCTTGTGGCTACCCTGGTTTTGGTCTCACTTGTGACAATACTATTGGTTTTCCAATCCTTAATCTTTCTAATACCTTATACATAATCAACCAATTTTTCTATCAAAACCAATCACTACGAGTGTCCAATGCTTATTTTTCAAGATCAAACACCAAAAAGGGTTGTCTTTCACCTACCAAAAACCTCAGTATTCCCATCACAATGTTCTATCTCGCACATAACCAAAGTAAAGTGACTTTGTTTTTCGGATGCGACTCAGCATCGCTCCCCAGAGAGCTGCAAAGTAACAAAATCGGTTGCTCAGCAGGAAACGAAACGAATTCGGTTGTGGCATTATATGAGGGGGATAAAAATGAAAGCTTTGTGTCAAAAAATTGCATGGGTGGTGAGGTGGTGAAAGCGATGGTGGAAAATGTTGTGAAAGGGGGGATTGAAGAGGCGCTGAGTAAAGGATTCCGGTTGAATTGGATTGCAAGTAACTGTTCCGATTGCAGCAGCAGTGGAGGGAGGTGTGGCTTCGATTCAGATACATACAATTTCCGATGTTACTGCACCGACAGGGTTCATGCTGCAAAATGTGAAACAGGTCTGTCTTTGCAAAATGATTTTGAACTTACAGCTCCAGTCGCTAGGAAGTCTCCTGCGGTGCATGTAATGACAATAGTGGGCTCGGTGATTGGAGTTGCAATTGCCTTGCTGATTGTCTTAGCTTGTTGGTTTAGGAAAAGGATATTCTCTCCCACATCTCCTTTGTTCAGGAAGAAGAATTCAAGCCATCAAATTATTGAAAAGTTTTTGAAGGAACATGGACCTCTTCCCGCTACTAGGTACAATTATTCAGATATTAAGAAAATAACAAATTCTTTCAAAAACAAATTAGGCCAAGGAGGATATGGAAGCGTATATAAAGGAAAGTTACACGACGGGCGTATTGTTGCCGTGAAGATTTTAAATGAATTAAAAGGGAATGGTGAAGATTTCATGAATGAAGTTGCAAGTATGAGTAGAACTTCACATGTCAATGTTGTTAGACTTTTGGGGTTTTGTTTGGATGGTTCTAAAAAAGCGTTAATATATGAATTCATGCCTAATGGATCTCTTGAGAAGTTTATATATGAAGAGAAAATTCCACCAGATGATCGACATTTGGCTTGCAAATCATTGTATGATATTGTAGTTGGCGTTGCTCAAGGATTAGAGTATTTACACAGAGGCTGCAACACTAGAATCTTACACTTTGACATAAAACCTCATAATATATTACTAGATGATGATTTTTGTCCAAAAATTTCTGATTTTGGACTTGCGAAAGTATGTCCAAGAAAAGAAAGCATTGTATCCTTATTTGGAGCTAGGGGACCAGGATATATTGCTCCAGAGTTGTTTTCAAGAAATTTTGGCGGGGTATCACATAAGTCAGATGTCTACAGTTATGGAATGATGGTTTTAGAGATGGTTGGACAAAAAAATAACATTAAGGTTGAAGTTGATTGTTCTAGTGAGTTATATTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGATTAAAGTGTATTAAAAATGAGAGTGATAAAGAAATGGTAAGAAAAATGACACTGGTGAGTTTATGGTGCATACAAACCAATCCTTTGAATCGACCCTCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAGCCTTCAAGTGTTGGAAATGCCACCAAAACCCTTTTTGTCTTCTCCTTCACCTTTAGTATTTTCAACCGATTTGTCATCTCTAACATTGTAA 1935 0.3824 MNKRIPLFMTLFCFLTTTTVCYVDPNFEACEPKTCGNQTITYPFYIKGTQEPSCGYPGFGLTCDNTIGFPILNLSNTLYIINQFFYQNQSLRVSNAYFSRSNTKKGCLSPTKNLSIPITMFYLAHNQSKVTLFFGCDSASLPRELQSNKIGCSAGNETNSVVALYEGDKNESFVSKNCMGGEVVKAMVENVVKGGIEEALSKGFRLNWIASNCSDCSSSGGRCGFDSDTYNFRCYCTDRVHAAKCETGLSLQNDFELTAPVARKSPAVHVMTIVGSVIGVAIALLIVLACWFRKRIFSPTSPLFRKKNSSHQIIEKFLKEHGPLPATRYNYSDIKKITNSFKNKLGQGGYGSVYKGKLHDGRIVAVKILNELKGNGEDFMNEVASMSRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKIPPDDRHLACKSLYDIVVGVAQGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKVCPRKESIVSLFGARGPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGQKNNIKVEVDCSSELYFPHWIYKRLELNQDLGLKCIKNESDKEMVRKMTLVSLWCIQTNPLNRPSMHKVVEMLEGSLQVLEMPPKPFLSSPSPLVFSTDLSSLTL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1040g00015 644 Pfam Protein kinase domain 342 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1040g00015 644 ProSiteProfiles Protein kinase domain profile. 339 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1040g00015 644 SMART serkin_6 339 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1040g00015 644 Gene3D Transferase(Phosphotransferase) domain 1 414 626 - -
Vivi1040g00015 644 Gene3D Phosphorylase Kinase; domain 1 302 413 - -
Vivi1040g00015 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vivi1040g00015 644 SUPERFAMILY Protein kinase-like (PK-like) 323 613 IPR011009 -
Vivi1040g00015 644 FunFam PR5-like receptor kinase 414 624 - -
Vivi1040g00015 644 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vivi1040g00015 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 311 629 IPR045874 GO:0004672
Vivi1040g00015 644 Pfam Wall-associated receptor kinase C-terminal 174 238 IPR032872 -
Vivi1040g00015 644 Pfam Wall-associated receptor kinase galacturonan-binding 30 94 IPR025287 GO:0030247
Vivi1040g00015 644 FunFam serine/threonine-protein kinase PBS1-like 307 413 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1040g00015 14 633 Receptor kinase-like Gene Family AT5G38260 40.524 5.25e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi1040g00015 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1040g00015 - - mtr:11418569 948.347