Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1040g00013 ATGCACCTATTAGGGGAGAAGAGGGAGATACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGGCTCTGGTCAATGTCTGTGGTGCCGTAGTCTGCAAGGAAGAATGCGATCCATTTGTATCTGTGACTCTTGTGAGGCAGGGTGCTAAACATAATGAAGTGAGAAAGACAATTAGCTTGACCTCTGAGAGTAGTGAACTTCTGTTTTCTGATGTTATTCCTGGAAAATACAGGCTTGAGGTGAAACATAGTTCCCCTGAATCAGTGGCCAAGGAAGATAATTGGTGCTGGGAGAAGAGCTTCATAGATGTAAATATTAGAGCTGAGGACTTGGAAGGAATTGTTTTTGTTCAAAAAGGTTACTGGGTCAATGTGATCTCCACTCATGAAGTTAGGGGGGTTACATAA 513 0.4035 MHLLGEKREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQEALVNVCGAVVCKEECDPFVSVTLVRQGAKHNEVRKTISLTSESSELLFSDVIPGKYRLEVKHSSPESVAKEDNWCWEKSFIDVNIRAEDLEGIVFVQKGYWVNVISTHEVRGVT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1040g00013 170 Gene3D Palm domain of DNA polymerase 2 72 IPR023211 -
Vivi1040g00013 170 SUPERFAMILY DNA/RNA polymerases 8 57 IPR043502 -
Vivi1040g00013 170 Pfam DNA polymerase family B 12 55 IPR006134 GO:0000166|GO:0003677
Vivi1040g00013 170 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
Vivi1040g00013 170 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 45 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1040g00013 8 56 Core DNA Replication Machinery Family AT5G67100 77.551 9.51e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1040g00013 K26500 - vvo:131639131 329.717