Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1040g00010 ATGGCGTCAACACTCTCTCTTCTCATTCTTCTAACGCTTTCCCATTTTCTCCTCATTGTTCAATCTTCTCAAAACCCAGACTTCGAAGCTCTCCTAGCTTTCAAAACCGCTTCAGACCCATCCAAAAAACTCACAACATGGAAAACTGGCACTGACCCATGTACTTGGAACGGCGTTTTGTGTGTCAAAGACCGAGTTTCACGACTCGTTCTCGAAAATCTCGACCTCCAAGGCTCCATTGAACCGTTAACCTCTCTAACTCAGCTCCGAGTTTTGAGTCTCAAGGGTAACCGTTTCTCCGGCAAAGTTCCAAATCTCTCAAACTTCTCTTCACTGAAACTTCTCTTCCTCTCTCACAACCATTTCTCCGGCGAGTTCCCGGTAACTCTAACGTCACTCTTCCGTCTCTACCGTCTCGATCTATCTTACAATAACTTCTCCGGCGAGATTCCGGTGATAGTCAACCGTTTACCTCACCTCCTCACTCTCCGTCTCGACGAGAATAAATTCTCCGGCCTAATTCCCGAACTAAGCCTTCCCGGTTTACAAGACTTCAATGTCTCCGGTAACAATCTCTCCGGCGAGATACCGAAAACTCTGTCGACATTCTCCGAATCATCGTTCCGGAAAAACTCGTTTCTCTGTGGAGCTCCGTTGGAGAAATGCAAAGCGGTTGAACCAAACAAACCCGGATCCGAAGGTGCCACAGCTACTTCACCATTAGTACCAAGCAGTGAAACCCCAACAACAACAGTTTCTTCTTCACCAAGCACAATGCCAACAACAACAACAACAACAACAACAACAAACCCCAAAAGCCATGAAAAAAGAGGTTCGAAAATGAGTCCTATAGTTCTAATAGCAATCATAGTAGGCGACATTTTCGTTCTCGGAATCGTTTGTTTAATTCTCTACTGCTATTTCTGGAGAAACCACGCTTCCAAATCGAAACAGCGAAAAGGGTTGAAGCTATTCGAGAGTGAAAAGATAGTGTATTCTTCGAGTCCTTACCCTACTCAAGGAGGGTTTGAGAGGGGAAGAATGGTGTTTTTCGAAGGAGAGAAAAGGTTCGAGCTTGAAGATTTGTTGCGTGCTTCAGCTGAAATGCTTGGGAAAGGTGGATTTGGAACTGCTTATAAAGCTGTGCTTGATGATGGGAATGTTGTTGCTGTGAAGAGGTTGAAAGATGCACAGATTGCAGGGAAGAGGGAGTTTGAGCAACACATGGAGATTCTTGGAAGGATTAGGCACCCGAATGTTGTGAGTTTGAGAGCTTATTATTTTGCAAGAGAAGAGAAGCTTTTGGTGTATGATTTCATGCCTAATGCTACTCTGTTCTGGCTTCTTCATGGAAACAGAGGACCTGGAAGAACCCCACTGGATTGGACCACAAGGCTTAAGATAGCAGCTGGTGCAGCACAAGGTGTAACTTTCATTCACAATTCATGTAAATCTCTTAAACTCACCCATGGTAACATCAAATCCACCAATATCCTCCTTGACAAGCAAGGAAATGCACGTGTGTCGGATTTTGGGCTTTCAGTCTTCAACAGCCCAAGCCCAATTGGAGCTGGTGGTAGATCAAACGGATACCGTGCTCCTGAAGTAACTGACGGTCGAAAACAGTCGCAGAAATCTGATGTGTACTCTTTTGGTGTTCTGCTGCTAGAGCTGCTTACAGGGAAGTGTCCTTCTGCTGTGGAGAGTGGTGGAAGTGGAGGTGGTTATGGTGGTTCGATGGTTGATCTACCTAGATGGGTTCAATCTGTTGTGAGAGAGGAATGGACTGCTGAGGTTTTTGATTTGGAGTTGATGAGGTACAAGGATATTGAAGAGGAAATGGTTGGGTTGCTTCAGATTGCTATGTCTTGTACTGCTGCTTTGCCTGATCAACGGCCGAGAATGTCACATGTTGTTAAGATGATTGAGGACTTGCGTGGGGTCGAAGTGTCACCATGTCATGACACGGCTGGCTCTGTCTCTGACTCACCTTCTTTGTCTGAAGATGCCTGTGCTGGTACTAGTAGTCAGTAA 2034 0.4548 MASTLSLLILLTLSHFLLIVQSSQNPDFEALLAFKTASDPSKKLTTWKTGTDPCTWNGVLCVKDRVSRLVLENLDLQGSIEPLTSLTQLRVLSLKGNRFSGKVPNLSNFSSLKLLFLSHNHFSGEFPVTLTSLFRLYRLDLSYNNFSGEIPVIVNRLPHLLTLRLDENKFSGLIPELSLPGLQDFNVSGNNLSGEIPKTLSTFSESSFRKNSFLCGAPLEKCKAVEPNKPGSEGATATSPLVPSSETPTTTVSSSPSTMPTTTTTTTTTNPKSHEKRGSKMSPIVLIAIIVGDIFVLGIVCLILYCYFWRNHASKSKQRKGLKLFESEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEILGRIRHPNVVSLRAYYFAREEKLLVYDFMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAQGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSVFNSPSPIGAGGRSNGYRAPEVTDGRKQSQKSDVYSFGVLLLELLTGKCPSAVESGGSGGGYGGSMVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAALPDQRPRMSHVVKMIEDLRGVEVSPCHDTAGSVSDSPSLSEDACAGTSSQ 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1040g00010 677 MobiDBLite consensus disorder prediction 653 677 - -
Vivi1040g00010 677 ProSitePatterns Protein kinases ATP-binding region signature. 370 402 IPR017441 GO:0005524
Vivi1040g00010 677 MobiDBLite consensus disorder prediction 226 277 - -
Vivi1040g00010 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 440 652 - -
Vivi1040g00010 677 SUPERFAMILY L domain-like 38 220 - -
Vivi1040g00010 677 MobiDBLite consensus disorder prediction 232 272 - -
Vivi1040g00010 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 647 IPR046959 -
Vivi1040g00010 677 Gene3D Phosphorylase Kinase; domain 1 344 439 - -
Vivi1040g00010 677 CDD STKc_IRAK 370 645 - -
Vivi1040g00010 677 SUPERFAMILY Protein kinase-like (PK-like) 368 642 IPR011009 -
Vivi1040g00010 677 Gene3D Transferase(Phosphotransferase) domain 1 440 656 - -
Vivi1040g00010 677 FunFam Leucine-rich repeat receptor-like protein kinase 133 222 - -
Vivi1040g00010 677 MobiDBLite consensus disorder prediction 656 677 - -
Vivi1040g00010 677 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Vivi1040g00010 677 FunFam Leucine-rich repeat receptor-like kinase 26 132 - -
Vivi1040g00010 677 ProSiteProfiles Protein kinase domain profile. 364 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1040g00010 677 Pfam Protein kinase domain 367 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1040g00010 677 FunFam pollen receptor-like kinase 1 337 439 - -
Vivi1040g00010 677 Gene3D Ribonuclease Inhibitor 20 83 IPR032675 -
Vivi1040g00010 677 Gene3D Ribonuclease Inhibitor 84 229 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1040g00010 27 677 Receptor kinase-like Gene Family AT1G68400 64.060 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi1040g00010 Pkinase 4.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1040g00010 - - cam:105851082 1070.46