Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1038g00003 ATGACTAGCAACCAAAGGATTAAGGAAACTCTCCCACCTTCAACAACTCGTTTCTTTAAAGTTATAACAACATCAATTTGTCAAGATGAAAAGCTGAGGATTCCAAACGGTTTTATTATGAAACATAAAAATGATATATCAAATCCAATGTTTCTCAAGACTCCGGATGACAAAAAATGGGAAATGCATGTCGCTAAAGTTGACAACGGTTTTTGGTTTCAAAAGGGTTGGAAGGAATTTGCTACCTATTATTCACTAGATCACGGACACATGATATTCTTTGAATACGAAGGAAACTCTCATTTTGTGGTACACATATTCGGCCTGAGTACACTTGAAATTGAATATCCTTTGAAAGAAAATCATCATGAACAAGACAACTTTATTGAAATTAGTGATGACGACTCAGTTGAAATTTTGGATAAATCAACTTCATGCAAGAAGAAGTCTAGACCTAAATCACCAATTTCATATCCTCGGTCACATAAGAAACTCCGAAGTGACACAAATAAAGATGTTGGAACAATCTCCAAATTTCATAACTTTTGCGAGCATCATGTTCAAGCTAATGACGATACAAGTGGTAGCGTTGAACGCCAGAGAGCGAAGCATGAGGACGTACAAGAAAACGAGCAGATAATTTCTAAAATTAATGATACAAGTGGTAGCGTTGAATGCCAGAGAGCGAAGCATGAGGACGTACAAGAAAACGAGCAGATAATTTCTAAAATGAATGAAGCGTTAAATAGAGCTAGAAGTTTCAAATCTAAAAATCCTTCATTCATGATTGCCATGAAATCTTCATATCTTAGCTATTCTTTGTATGTCCCAACAAAATTTATAAAAAATCATTTGAAGAAAGGGAAAAGTGATATTCTTCTTCAGCTCATTGATGGGAGAACTTGGGATGTCAAATATTCTGTGGGAAAACTTAGAGCTGGATGGACGAAATTTGTAGGAGACAATAAGTTGACAGTGGGTGATGTGTGTGTGTTTGAGTTAACCAAAAGTAAAGTTCTTACTTTTAAAGTACTAATATTTAGAGTTGAAGAATCACATTTCCCTTTATCTCAAGAATCGGATCAAAGAGACAAAGACATGTCGGGTGTTGAGAATCAAACCATTATTCTCGATAAAGATAAGAAGGCAGCACAAAGAACTTCATTACGAACAAAAACTCATTTATCTATAAGTGAAGATCAGAGGAAAGATGATAAGTTCAACTCTAAATATCCTTTTTTCAAAGTCAACATTACGATGATTGATCGAGGGAATTCTAGATTGACTGTACCAATAAACTTCATTAGGAAGTACTTGGGTGTTAAAAAAGAGCAGACTGTGGTGTTAAAATTTGGGAAGAAATCATGGCCTGTAAAATTGTTCTGTTATTCAGACAAAAGATCAGGACAGATTTCTGGAGGTTGGAATCAATTTTGGAAAGAAAATAAGTTGAAAAGTGGAGATGTATGTGTCTTTGAGCTCATCAAGAACAAAGATGCTATACTTCGAGTTCATATTTTTAGAGGCAATTGA 1533 0.3483 MTSNQRIKETLPPSTTRFFKVITTSICQDEKLRIPNGFIMKHKNDISNPMFLKTPDDKKWEMHVAKVDNGFWFQKGWKEFATYYSLDHGHMIFFEYEGNSHFVVHIFGLSTLEIEYPLKENHHEQDNFIEISDDDSVEILDKSTSCKKKSRPKSPISYPRSHKKLRSDTNKDVGTISKFHNFCEHHVQANDDTSGSVERQRAKHEDVQENEQIISKINDTSGSVECQRAKHEDVQENEQIISKMNEALNRARSFKSKNPSFMIAMKSSYLSYSLYVPTKFIKNHLKKGKSDILLQLIDGRTWDVKYSVGKLRAGWTKFVGDNKLTVGDVCVFELTKSKVLTFKVLIFRVEESHFPLSQESDQRDKDMSGVENQTIILDKDKKAAQRTSLRTKTHLSISEDQRKDDKFNSKYPFFKVNITMIDRGNSRLTVPINFIRKYLGVKKEQTVVLKFGKKSWPVKLFCYSDKRSGQISGGWNQFWKENKLKSGDVCVFELIKNKDAILRVHIFRGN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1038g00003 510 ProSiteProfiles B3 DNA-binding domain profile. 259 350 IPR003340 GO:0003677
Vivi1038g00003 510 MobiDBLite consensus disorder prediction 143 170 - -
Vivi1038g00003 510 CDD B3_DNA 259 348 IPR003340 GO:0003677
Vivi1038g00003 510 SMART B3_2 18 110 IPR003340 GO:0003677
Vivi1038g00003 510 SMART B3_2 261 350 IPR003340 GO:0003677
Vivi1038g00003 510 SMART B3_2 413 510 IPR003340 GO:0003677
Vivi1038g00003 510 SUPERFAMILY DNA-binding pseudobarrel domain 407 508 IPR015300 -
Vivi1038g00003 510 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
Vivi1038g00003 510 PANTHER B3 DOMAIN-CONTAINING 253 506 - -
Vivi1038g00003 510 Pfam B3 DNA binding domain 18 107 IPR003340 GO:0003677
Vivi1038g00003 510 Pfam B3 DNA binding domain 265 348 IPR003340 GO:0003677
Vivi1038g00003 510 Pfam B3 DNA binding domain 413 509 IPR003340 GO:0003677
Vivi1038g00003 510 SUPERFAMILY DNA-binding pseudobarrel domain 254 349 IPR015300 -
Vivi1038g00003 510 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Vivi1038g00003 510 Gene3D - 12 111 IPR015300 -
Vivi1038g00003 510 ProSiteProfiles B3 DNA-binding domain profile. 413 510 IPR003340 GO:0003677
Vivi1038g00003 510 CDD B3_DNA 412 508 IPR003340 GO:0003677
Vivi1038g00003 510 CDD B3_DNA 17 107 IPR003340 GO:0003677
Vivi1038g00003 510 Gene3D - 241 352 IPR015300 -
Vivi1038g00003 510 Gene3D - 396 510 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1038g00003 407 510 B3 DNA Binding Superfamily AT3G18990 36.449 3.64e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1038g00003 B3 2.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1038g00003 - - vvo:131639116 763.451