Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1038g00002 ATGACTAGCAACCAAGGAAATAAGCAAACTCTCCCACCTTCAGCTACTCGTTTCTTTAAAGTTATAACAACATCAATTTGTCAAAATGGAAAGCTTAGGATTCCAAGCGGTTTTATTATGAAACATAATAATGATATATCAAATCGAATGTTTCTCAAGACTCCGGATGAAAAAAAATGGGAAATGCATATAGCTAAAGTTGACAAGTGTTTTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCTACATATTATTCACTAGATCACGGACACGTGATATTCTTTGAATACGAAGGAAACTCTCATTTTGTGGTACACATATTCGGCCCGAGTACACTTGAAATTGAATATCCTTTCAATGAAAATCATCATGAACAAGACAACCTTATTGAAATTAGTGATGACGACTCAGTTGAAATTTCGGATAAATCAACTTCATGCAAGAAGAAGTCTATACCTAAATCACCAATTTCATATCCTCGGTCACATAAGAAACTTAGAAGTGACACGAATGAAGATGTTGAAACAAACTCCAAATATCATAACTTTCCTGAGCATCATGTTCAAGCTAAAGACGATACAAATGATAGCATTGAACACCAAAGAGCGGAGGATGATGAGCACGAGCACGAGCATGCGGAAGAACAAGAACAGATAACTTCTAAAATTAATGAAGCATTAAATAGAGCTAGAAGTTTCAAATCTAAAAATCCATCATTCAAGATTGTCATGAAATCTTCATATCTTCATAGCTATTTTTTGTATGTCCCAACAAAATTTTCAATAGATCATATAGAGAAAGAGCAAAGTGATATTCTTCTTCAGCTCATGGATGGGAGAACTTGGGATGCCAAATATTCTTTTGGAAAAATTAAAGCTGGATGGAAGAAATTTGTTGGAGACAATAAGTTGAAAGTGGGTGATGTGTGTGTGTTTGAATTAACCAAAAGTAAAGTTCTTACTTTAAAAGTACTAATATTTAGAATTGAAGAGCCACATTTTCCTTCACCTCAAGATCAAAGAGACAAAGACATGTCCGATGTTGAGAATCAAACTATTATTCTCGATAAAGGTAAGAAGGTGGCACAAAGAACTTCATTGCGAATAAATACTCATGCATCTATGAATGAAGTTCAAGGCAAAGATGATGAGTTCAACTCTAAATATCCTTTTTTCAAAGTCAAAATTACGATGAATCCACGAAGACATTATAGATTGATTGTACCAATATCCTTCATCAGAACATACTTGGATAATAAGAAGGAGCAGATTGTCGAGTTAAAATTCGGGAAGAAATCGTGGCCGGTAAAATTGCTTTATTACAAGAAATCAGGACAGTTTTCTATAGGTTGGAATCAATTCTGGGAAGAAAATAACTTGAAAGTTGGAGATGTATGTGTCTTTGAGCTCATCAAGAACAAAGATGCTATACTTCGAGTTCATATCTTTAGAGGCAATTGA 1458 0.3429 MTSNQGNKQTLPPSATRFFKVITTSICQNGKLRIPSGFIMKHNNDISNRMFLKTPDEKKWEMHIAKVDKCFWFQKGWKEFATYYSLDHGHVIFFEYEGNSHFVVHIFGPSTLEIEYPFNENHHEQDNLIEISDDDSVEISDKSTSCKKKSIPKSPISYPRSHKKLRSDTNEDVETNSKYHNFPEHHVQAKDDTNDSIEHQRAEDDEHEHEHAEEQEQITSKINEALNRARSFKSKNPSFKIVMKSSYLHSYFLYVPTKFSIDHIEKEQSDILLQLMDGRTWDAKYSFGKIKAGWKKFVGDNKLKVGDVCVFELTKSKVLTLKVLIFRIEEPHFPSPQDQRDKDMSDVENQTIILDKGKKVAQRTSLRINTHASMNEVQGKDDEFNSKYPFFKVKITMNPRRHYRLIVPISFIRTYLDNKKEQIVELKFGKKSWPVKLLYYKKSGQFSIGWNQFWEENNLKVGDVCVFELIKNKDAILRVHIFRGN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1038g00002 485 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Vivi1038g00002 485 SUPERFAMILY DNA-binding pseudobarrel domain 384 483 IPR015300 -
Vivi1038g00002 485 SMART B3_2 239 329 IPR003340 GO:0003677
Vivi1038g00002 485 SMART B3_2 390 485 IPR003340 GO:0003677
Vivi1038g00002 485 SMART B3_2 18 110 IPR003340 GO:0003677
Vivi1038g00002 485 Gene3D - 12 111 IPR015300 -
Vivi1038g00002 485 Pfam B3 DNA binding domain 390 484 IPR003340 GO:0003677
Vivi1038g00002 485 Pfam B3 DNA binding domain 18 107 IPR003340 GO:0003677
Vivi1038g00002 485 Pfam B3 DNA binding domain 239 327 IPR003340 GO:0003677
Vivi1038g00002 485 CDD B3_DNA 390 483 IPR003340 GO:0003677
Vivi1038g00002 485 ProSiteProfiles B3 DNA-binding domain profile. 390 485 IPR003340 GO:0003677
Vivi1038g00002 485 MobiDBLite consensus disorder prediction 141 217 - -
Vivi1038g00002 485 CDD B3_DNA 239 327 IPR003340 GO:0003677
Vivi1038g00002 485 Gene3D - 369 485 IPR015300 -
Vivi1038g00002 485 Gene3D - 218 330 IPR015300 -
Vivi1038g00002 485 MobiDBLite consensus disorder prediction 161 217 - -
Vivi1038g00002 485 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Vivi1038g00002 485 PANTHER B3 DOMAIN-CONTAINING 361 481 - -
Vivi1038g00002 485 SUPERFAMILY DNA-binding pseudobarrel domain 232 328 IPR015300 -
Vivi1038g00002 485 Coils Coil 197 217 - -
Vivi1038g00002 485 CDD B3_DNA 17 107 IPR003340 GO:0003677
Vivi1038g00002 485 ProSiteProfiles B3 DNA-binding domain profile. 238 329 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1038g00002 384 485 B3 DNA Binding Superfamily AT3G18990 39.048 1.95e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1038g00002 B3 2.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1038g00002 - - vvo:131639116 943.725