Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1037g00005 ATGTTCGGTTTAAGAGACTTAGTTTTCATAGCTCAAACCCCTTCATCACTTCACCACCACCACCAACAACAAAACCAACCCATTTCATCAGATCATCCTCCTCATCCTCCCAACCTTCCCTTACCTTCATCCTCAGCTCTAAGCGTTGGTCTTGGAATTTTCCCACTCCTAACCACCACTCACATTGATAATAACAATAACAATAATAATAATAATCAAGACTCAAACTTTTGGAATCTCAAGATGTGTCAACCACAACAAGTGATGATGATGAATTCAATCCCCAAAAGGGTTGAAGAAGATGATCAAAAGATTCAGAATCTGATGATGGGTTGCGATGAAAACGGTGAGTTTAGGGTGTGTCAAGATTGCGGAAACAGAGCTAAGAAAGATTGCAGCTTTAAGAGATGCAGGACTTGTTGTAAGAGTCGTGGGTTTGATTGTAGTACTCACGTGAAGAGCACGTGGACTCCGGCTTCCATGCGGCGAGACCGGAATGGAGCGGTGGTGGTTGAAGGTGGTGGTGACAGTGATGGCTCTTCCGGAAGTAAGAGGCAGAGGATTTTGATGGCATCATCATCACATGATAATGTTGCTGCTGCTACCTCTCATAGTTCAAGCTCTAATGCTGCTTCTAGAAGAAGCTTAAGCTTGGATATAACTAGCTCTTGTCACCAAGATGTTGGATTCAAGCAATCATTGCCAAGATATGTGACTGCACCAGCTGTATTCAAGTGTCATAGAGTTTCTGGAATTGGGAGTGATGAAGATGAGATTGCTTACTTGGCTACTGTGAGTATTAATGGGCATGTGTTCAAAGGGTTTGTTTATGATCAAGGTGTTGTTGTGGATGGAAAAGATGAAACAATGGGTTGTGTTTCGGAGTTGCAGCTTGGAAGTAATGGAAGTGGAAAGAGTAGGGAGTGTTCTTCTGCAATTCATGTTCCAGCAACTAGTGCTTACCCTGCTTCTGCTTGTTGA 981 0.4292 MFGLRDLVFIAQTPSSLHHHHQQQNQPISSDHPPHPPNLPLPSSSALSVGLGIFPLLTTTHIDNNNNNNNNNQDSNFWNLKMCQPQQVMMMNSIPKRVEEDDQKIQNLMMGCDENGEFRVCQDCGNRAKKDCSFKRCRTCCKSRGFDCSTHVKSTWTPASMRRDRNGAVVVEGGGDSDGSSGSKRQRILMASSSHDNVAAATSHSSSSNAASRRSLSLDITSSCHQDVGFKQSLPRYVTAPAVFKCHRVSGIGSDEDEIAYLATVSINGHVFKGFVYDQGVVVDGKDETMGCVSELQLGSNGSGKSRECSSAIHVPATSAYPASAC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1037g00005 326 NCBIfam LRP1 C-terminal domain 234 281 IPR006511 -
Vivi1037g00005 326 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 33 312 IPR007818 GO:0003700|GO:0006355
Vivi1037g00005 326 MobiDBLite consensus disorder prediction 15 29 - -
Vivi1037g00005 326 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Vivi1037g00005 326 MobiDBLite consensus disorder prediction 15 44 - -
Vivi1037g00005 326 Pfam Domain of unknown function (DUF702) 120 281 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1037g00005 1 299 C2H2 Transcription Factor Family AT5G12330 36.570 1.70e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi1037g00005 DUF702 1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1037g00005 - - gmx:100777812 319.316