LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1033g00012	ATGAGGAAATCCTTGGTTATTGCCTTTCTCATAGCCATATGTTTCATTGCTTTTATCATATCCAAGATTGTTATCTCAATCCTCCTCTATAAAAGATGGAAAAGAAAACATGTCATTTATGAAGGTTATACAGGAGGGAAGATGGTGATATTTAGGTCTTCAATTCTTAAATCTTTAACAACTGAGATGGTGTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGTTCTGGTGGTTACGGTGTAGTTTACGAACTAAAACTGGACGATTCCGCGGCTTTTGCTGTGAAGAGAATGAACCGCGGAACAGCGGAGAGAGATAAAGGTTTTGAGAGAGAGTTACAAGCAATGGCAGACATAAAACACCGCAATGTTGTGACTCTTCATGGATATTATACTGCACCACATTACAATCTTCTCATATATGAGTTAATGCCTAATGGAAGTTTGGATTCCCTTTTGCATGGGAGATCGACGAACAAGGTTTTGGATTGGGAGACAAGACACAGAATAGCTTTAGGTGCAGCTAGAGGAATATCATATCTTCACCATGATTGTATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAATATATTGCTGGATCAAAATATGGAAGCTCGAGTTTCGGATTTCGGGTTAGCCACGTTGATGGAACCAAACAAAACTCATGTTTCAACGATTGTTGCTGGAACTTTCGGATACTTGGCTCCAGAATATTTTGATACGGGAAGAGCGACACTCAAAGGGGATGTTTACAGTTTTGGAGTAGTGTTATTGGAGCTTTTAACCGGAAAGAAACCTAGTGACGAAGCATTTATGGAAGAGGGAACCAAACTCGTTACATGGGTGAAAGCGGTTGTTCAAGAGAAGAAAGAAGAGGTAGTTCTGGATAGTAGCTTAGGTTCATGTTGTCCAATGCATGAGGTTAACAAGGTATTCAACATTGCAATGATGTGTCTTGAACCAGATCCTCTGAACAGGCCAACCATGGCTGAAGTCGTTAACCTGCTCGAGAAAACCGAAACAGCATCCTGA	1047	0.404	MRKSLVIAFLIAICFIAFIISKIVISILLYKRWKRKHVIYEGYTGGKMVIFRSSILKSLTTEMVLKKTQKLNNKDIIGSGGYGVVYELKLDDSAAFAVKRMNRGTAERDKGFERELQAMADIKHRNVVTLHGYYTAPHYNLLIYELMPNGSLDSLLHGRSTNKVLDWETRHRIALGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTKLVTWVKAVVQEKKEEVVLDSSLGSCCPMHEVNKVFNIAMMCLEPDPLNRPTMAEVVNLLEKTETAS	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1033g00012	348	ProSiteProfiles	Protein kinase domain profile.	71	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1033g00012	348	ProSitePatterns	Protein kinases ATP-binding region signature.	77	99	IPR017441	GO:0005524
	Vivi1033g00012	348	Gene3D	Phosphorylase Kinase; domain 1	47	146	-	-
	Vivi1033g00012	348	Gene3D	Transferase(Phosphotransferase) domain 1	147	348	-	-
	Vivi1033g00012	348	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	147	348	-	-
	Vivi1033g00012	348	Pfam	Protein kinase domain	73	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1033g00012	348	SMART	serkin_6	71	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1033g00012	348	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	7	345	-	-
	Vivi1033g00012	348	FunFam	Receptor-like serine/threonine-protein kinase	42	146	-	-
	Vivi1033g00012	348	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Vivi1033g00012	348	SUPERFAMILY	Protein kinase-like (PK-like)	51	342	IPR011009	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1033g00012	28	342	Receptor kinase-like Gene Family	AT2G35620	47.484	4.78e-98	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIa	Vivi1033g00012		Pkinase	6.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1033g00012	-		-	ahf:112703495	552.747