Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1033g00008 ATGACGTTTATGAATAACATTAGAAGCGCTACGAAAGAAGCGTTGGATCGCACTGCGATAATCGCAAAGTTCTTATGTTGCCTTCACTTCACCGCCAACTACCTCTGCTCCCCAACTCACGCGTATGGACCTAGCATGCTCCCTACCCTAAATATCGCCGGCGAGGTTGTTCTCGTCGAACACCTGTCTCCGCGGATTGGGAAAGTTGGTCACGGTGACTTGGTTCTTGTGACGTCGCCGTTGAACCCTAATCGGAACTTGACAAAGCGTGTTGTTGCTATGGAAGGGGATACTGTTACTTTCTTTGATGCTTCGGGTTCTGATTCCTCAAGAACTGCTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCCCGTGATTCTCGTCACTTTGGTCCTGTTCCATATGGCCTTATAAAAGGAAAAGTGTTTTTGCGGGTTTGGCCACCCAGTAGCTTTGGACTGCTAGATAATTGA 492 0.4776 MTFMNNIRSATKEALDRTAIIAKFLCCLHFTANYLCSPTHAYGPSMLPTLNIAGEVVLVEHLSPRIGKVGHGDLVLVTSPLNPNRNLTKRVVAMEGDTVTFFDASGSDSSRTAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIKGKVFLRVWPPSSFGLLDN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1033g00008 163 CDD S26_SPase_I 43 148 IPR019533 GO:0004252|GO:0006465
Vivi1033g00008 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 134 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi1033g00008 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 34 50 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi1033g00008 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 87 99 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi1033g00008 163 SUPERFAMILY LexA/Signal peptidase 34 161 IPR036286 -
Vivi1033g00008 163 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 162 - -
Vivi1033g00008 163 FunFam Inner membrane protease subunit 1 32 160 - -
Vivi1033g00008 163 Pfam Signal peptidase, peptidase S26 111 153 IPR019533 GO:0004252|GO:0006465
Vivi1033g00008 163 Pfam Signal peptidase, peptidase S26 21 102 IPR019533 GO:0004252|GO:0006465
Vivi1033g00008 163 Gene3D Umud Fragment, subunit A 32 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1033g00008 46 161 MADS-box Gene Family AT1G29960 53.846 1.46e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1033g00008 K09647 - cave:132173278 246.514