Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi102g00070 ATGGAAAAAAAAGATTCCTCTGGTAATAGTAAGTGGATGGCATTTGCTAACAAGAATGATGAAAACTCAGCTGCAACAAAGGCTGCTTCTGGTGATGATGATGATCAAATTCTAACCGAAGCGGCCATTGCGGAGAGGACGGCGGAATGGGGACTTGTTGTGAACACAAGCAATTTCAAAGCGGGAATTGAGACATCAAGTTCTTCAATTGATGGTGACAAGAGCAGAAGCATGTCGGATAGGTTTGTTGAATCGACGAGGACTTCGGGGGATTCGAATTTTGGTTCGGAGGCTAGATTGTCAGGGTTGATTCCAAGAGTTTCACAAGACTTGAAAGAAGCGTTGGCTACACTTCAACAAACATTTGTTGTGTCAGATGCAACTAAACCTGATTGTCCTATCTTGTATGCAAGCAGTGGCTTTTTTACTATGACTGGTTACTCATCAAAAGAGGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCAAAAATTCGGGATGCAACTAAGAATGGGAGAAGTTATTGTGGCAGGCTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTAACTGTTACACCAATCAAAGATGATCATGGAAATACTATCAAATTCATAGGAATGCAGGTTGAGGTGAGCAAGTACACGGAAGGTGTGAACGAGAAGGAACTAAGACCAAACGGATTACCAAAATCATTAATTCGCTACGACGCTCGTCAAAAGGAGAAAGCTATGGGTTCAATCACTGAGGTTATTCAAACCGTTAAGGATCCTAAATCGATTATTCGCGGTAAGAATGAGGACACTTCCGCCACATTACATGAAGATCAAGAGAATCTCAATCATGAATTTGCTTTGCCAAAGTCTGTTGAATCTGTGAATGCTGGTACACCACTTGGTAGACAAACACCATTGAAACTCCATGGTGATAGTAATAATATTTCGCGCTTTAGTTCTTACGAGGAAAGGAGCAAGTCGTCAAGAAAATCAGGAGTTTCTTTGAAAGGTAATAAAGGGAAATCAATGAGTTCTCTTGGAAGAGATAAAGAGAAGGCTATTATTGAACCTGAAGTTTTGATGACAAAGGAAGTAGAATGGTCCAATTGGGAACTAGGAGAGAGGGATATAAGGCAAGGAATTGATTTAGCAACCACATTGGAAAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCTATAATATTTGCATCAGATAGCTTTCTTGAGCTTACAGAATACACGCGAGAAGAAATTTTGGGTCGGAATTGCCGGTTTCTTCAAGGACCAGAAACAGACCAGGCAACTGTCTCTAGAATTAGAGATGCTATCAAAGATCAGAGGGAAATCACAGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAGCCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATTTAGAGCCTTTAAGAAACCGCCTCTCTGAGGGTTCCGAGCTACAAAGTGCTAAATTGGTGAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAAACAGTTTTTCCAAGACCACACAAAAGGGACAATCCTTCTTGGGTAGCTATTCAAAAGATCACCGCAAGAGGCGAGAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCTTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTTCGAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGATGAATCGTAATAAGGTTCATCGAGCGTGCATTGAAAGAGAGATTATATCATTACTAGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACAGACACGCATGTATGTTTGATTACTGACTTCTGCCCTGGGGGTGAGTTGTTCGCGTTACTCGACAGGCAACCCATGAAGATTCTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATCGGCTTGGAATATCTCCATTGTTTGGGTATAGTTTATCGTGACTTGAAGCCCGAAAATCTGTTACTTCAAAAGGATGGCCATGTTGTATTAACCGATTTTGATCTCTCATTTATTACATCTTGTAAACCCCAGGTTATGAAGCAGTCATTACCTGGTAATAGAAGCGGTAGAAGATCTCGAAGTCAGCCACCACCAATATTTTTTGCGGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTTCCCCGGAAATCATAACCGGAGCGAGGCATACGAGTGCTATAGATTGGTGGACCCTAGGTATCTTGTTGTATGAGATGCTATATGGTCGAACACCATTTCGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGATTATTAATGCACTATTGCAAAGAGACCCGGGCAGTCGTCTAGGTTCAACAACAGGAGCTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGATGTTCCTCCTCAGTTGATAGGAAAAGATCCAACGGTAAAGGACAAGAAATGGGAAGATGATGGTGTGCTAATTAGTTCCATCGATATGGATATTTTTTGA 2787 0.4072 MEKKDSSGNSKWMAFANKNDENSAATKAASGDDDDQILTEAAIAERTAEWGLVVNTSNFKAGIETSSSSIDGDKSRSMSDRFVESTRTSGDSNFGSEARLSGLIPRVSQDLKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVIQTVKDPKSIIRGKNEDTSATLHEDQENLNHEFALPKSVESVNAGTPLGRQTPLKLHGDSNNISRFSSYEERSKSSRKSGVSLKGNKGKSMSSLGRDKEKAIIEPEVLMTKEVEWSNWELGERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQTVFPRPHKRDNPSWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMMNRNKVHRACIEREIISLLDHPFLPTLYTSFQTDTHVCLITDFCPGGELFALLDRQPMKILKEDSARFYAAEVVIGLEYLHCLGIVYRDLKPENLLLQKDGHVVLTDFDLSFITSCKPQVMKQSLPGNRSGRRSRSQPPPIFFAEPITQSNSFVGTEEYISPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQIINALLQRDPGSRLGSTTGANEIKQHPFFRGINWPLIRNMSPPPLDVPPQLIGKDPTVKDKKWEDDGVLISSIDMDIF 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi102g00070 928 PANTHER FLIPPASE KINASE 1-RELATED 99 895 - -
Vivi102g00070 928 CDD PAS 134 223 IPR000014 -
Vivi102g00070 928 FunFam LOV domain-containing protein 379 542 - -
Vivi102g00070 928 Pfam PAS domain 128 224 IPR000014 -
Vivi102g00070 928 Pfam PAS domain 412 504 IPR000014 -
Vivi102g00070 928 MobiDBLite consensus disorder prediction 297 358 - -
Vivi102g00070 928 ProSiteProfiles PAS repeat profile. 107 180 IPR000014 -
Vivi102g00070 928 FunFam Putative LOV domain-containing protein 674 891 - -
Vivi102g00070 928 NCBIfam PAS domain S-box protein 416 504 IPR000014 -
Vivi102g00070 928 NCBIfam PAS domain S-box protein 133 224 IPR000014 -
Vivi102g00070 928 MobiDBLite consensus disorder prediction 748 767 - -
Vivi102g00070 928 Gene3D Phosphorylase Kinase; domain 1 589 673 - -
Vivi102g00070 928 FunFam Putative LOV domain-containing protein 121 277 - -
Vivi102g00070 928 ProSiteProfiles PAS repeat profile. 389 462 IPR000014 -
Vivi102g00070 928 SUPERFAMILY PYP-like sensor domain (PAS domain) 408 504 IPR035965 -
Vivi102g00070 928 ProSiteProfiles PAC domain profile. 181 235 IPR000700 -
Vivi102g00070 928 Pfam Protein kinase domain 593 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi102g00070 928 MobiDBLite consensus disorder prediction 1 34 - -
Vivi102g00070 928 MobiDBLite consensus disorder prediction 10 26 - -
Vivi102g00070 928 SUPERFAMILY PYP-like sensor domain (PAS domain) 128 220 IPR035965 -
Vivi102g00070 928 Gene3D Transferase(Phosphotransferase) domain 1 674 893 - -
Vivi102g00070 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Vivi102g00070 928 Gene3D PAS domain 121 292 - -
Vivi102g00070 928 ProSiteProfiles Protein kinase domain profile. 590 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi102g00070 928 ProSiteProfiles PAC domain profile. 463 517 IPR000700 -
Vivi102g00070 928 ProSitePatterns Protein kinases ATP-binding region signature. 596 619 IPR017441 GO:0005524
Vivi102g00070 928 SMART serkin_6 590 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi102g00070 928 MobiDBLite consensus disorder prediction 317 331 - -
Vivi102g00070 928 SMART pac_2 184 226 IPR001610 -
Vivi102g00070 928 SMART pac_2 466 508 IPR001610 -
Vivi102g00070 928 Gene3D PAS domain 381 542 - -
Vivi102g00070 928 CDD STKc_phototropin_like 588 902 - -
Vivi102g00070 928 SMART pas_2 109 178 IPR000014 -
Vivi102g00070 928 SMART pas_2 391 460 IPR000014 -
Vivi102g00070 928 CDD PAS 416 504 IPR000014 -
Vivi102g00070 928 FunFam LOV domain-containing protein 589 673 - -
Vivi102g00070 928 SUPERFAMILY Protein kinase-like (PK-like) 569 906 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi102g00070 1 927 AGC Kinase Gene Family AT5G58140 69.989 0.0 1281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi102g00070 Pkinase 1.2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi102g00070 K20715 - gmx:100804783 1488.4