Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi102g00068 | ATGGAAAAAAAAGATTCCTCTGGTAATAGTAAGTGGATGGCATTTGCTAACAAGAATGATGAAAACTCAGCTGCAACAAAGGCTGCTTCTGGTGATGATGATGATCAAATTCTAACCGAAGCGGCCATTGCGGAGAGGACGGCGGAATGGGGACTTGTTGTGAACACAAGCAATTTCAAAGCGGGAATTGAGACATCAAGTTCTTCAATTGATGGTGACAAGAGCAGAAGCATGTCGGATAGGTTTGTTGAATCGACGAGGACTTCGGGGGATTCGAATTTTGGTTCGGAGGCTAGATTGTCAGGGTTGATTCCAAGAGTTTCACAAGACTTGAAAGAAGCGTTGGCTACACTTCAACAAACATTTGTTGTGTCAGATGCAACTAAACCTGATTGTCCTATCTTGTATGCAAGCAGTGGCTTTTTTACTATGACTGGTTACTCATCAAAAGAGGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCAAAAATTCGGGATGCAACTAAGAATGGGAGAAGTTATTGTGGCAGGCTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTAACTGTTACACCAATCAAAGATGATCATGGAAATACTATCAAATTCATAGGAATGCAGGTTGAGGTGAGCAAGTACACGGAAGGTGTGAACGAGAAGGAACTAAGACCAAACGGATTACCAAAATCATTAATTCGCTACGACGCTCGTCAAAAGGAGAAAGCTATGGGTTCAATCACTGAGGTTATTCAAACCGTTAAGGATCCTAAATCGATTATTCGCGGTAAGAATGAGGACACTTCCGCCACATTACATGAAGATCAAGAGAATCTCAATCATGAATTTGCTTTGCCAAAGTCTGTTGAATCTGTGAATGCTGGTACACCACTTGGTAGACAAACACCATTGAAACTCCATGGTGATAGTAATAATATTTCGCGCTTTAGTTCTTACGAGGAAAGGAGCAAGTCGTCAAGAAAATCAGGAGTTTCTTTGAAAGGTAATAAAGGGAAATCAATGAGTTCTCTTGGAAGAGATAAAGAGAAGGCTATTATTGAACCTGAAGTTTTGATGACAAAGGAAGTAGAATGGTCCAATTGGGAACTAGGAGAGAGGGATATAAGGCAAGGAATTGATTTAGCAACCACATTGGAAAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCTATAATATTTGCATCAGATAGCTTTCTTGAGCTTACAGAATACACGCGAGAAGAAATTTTGGGTCGGAATTGCCGGTTTCTTCAAGGACCAGAAACAGACCAGGCAACTGTCTCTAGAATTAGAGATGCTATCAAAGATCAGAGGGAAATCACAGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAGCCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATTTAGAGCCTTTAAGAAACCGCCTCTCTGAGGGTTCCGAGCTACAAAGTGCTAAATTGGTGAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAAACAGTTTTTCCAAGACCACACAAAAGGGACAATCCTTCTTGGGTAGCTATTCAAAAGATCACCGCAAGAGGCGAGAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCTTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTTCGAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGATGAATCGTAATAAGGTTCATCGAGCGTGCATTGAAAGAGAGATTATATCATTACTAGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACAGACACGCATGTATGTTTGATTACTGACTTCTGCCCTGGGGGTGAGTTGTTCGCGTTACTCGACAGGCAACCCATGAAGATTCTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATCGGCTTGGAATATCTCCATTGTTTGGTTTATCGTGACTTGAAGCCCGAAAATCTGTTACTTCAAAAGGATGGCCATGTTGTATTAACCGATTTTGATCTCTCATTTATTACATCTTGTAAACCCCAGGTTATGAAGCAGTCATTACCTGGTAATAGAAGCGGTAGAAGATCTCGAAGTCAGCCACCACCAATATTTTTTGCGGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTTCCCCGGAAATCATAACCGGAGCGAGGCATACGAGTGCTATAGATTGGTGGACCCTAGGTATCTTGTTGTATGAGATGCTATATGGTCGAACACCATTTCGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGATTATTAATGCACTATTGCAAAGAGACCCGGGCAGTCGTCTAGGTTCAACAACAGGAGCTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGATGTTCCTCCTCAGTTGATAGGAAAAGATCCAACGGTAAAGGACAAGAAATGGGAAGATGATGGTGTGCTAATTAGTTCCATCGATATGGATATTTTTTGA | 2781 | 0.4074 | MEKKDSSGNSKWMAFANKNDENSAATKAASGDDDDQILTEAAIAERTAEWGLVVNTSNFKAGIETSSSSIDGDKSRSMSDRFVESTRTSGDSNFGSEARLSGLIPRVSQDLKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVIQTVKDPKSIIRGKNEDTSATLHEDQENLNHEFALPKSVESVNAGTPLGRQTPLKLHGDSNNISRFSSYEERSKSSRKSGVSLKGNKGKSMSSLGRDKEKAIIEPEVLMTKEVEWSNWELGERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQTVFPRPHKRDNPSWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMMNRNKVHRACIEREIISLLDHPFLPTLYTSFQTDTHVCLITDFCPGGELFALLDRQPMKILKEDSARFYAAEVVIGLEYLHCLVYRDLKPENLLLQKDGHVVLTDFDLSFITSCKPQVMKQSLPGNRSGRRSRSQPPPIFFAEPITQSNSFVGTEEYISPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQIINALLQRDPGSRLGSTTGANEIKQHPFFRGINWPLIRNMSPPPLDVPPQLIGKDPTVKDKKWEDDGVLISSIDMDIF | 926 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi102g00068 | 926 | SMART | serkin_6 | 590 | 877 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vivi102g00068 | 926 | NCBIfam | PAS domain S-box protein | 416 | 504 | IPR000014 | - | |
| Vivi102g00068 | 926 | NCBIfam | PAS domain S-box protein | 133 | 224 | IPR000014 | - | |
| Vivi102g00068 | 926 | Pfam | PAS domain | 128 | 224 | IPR000014 | - | |
| Vivi102g00068 | 926 | Pfam | PAS domain | 412 | 504 | IPR000014 | - | |
| Vivi102g00068 | 926 | CDD | PAS | 134 | 223 | IPR000014 | - | |
| Vivi102g00068 | 926 | ProSiteProfiles | Protein kinase domain profile. | 590 | 877 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vivi102g00068 | 926 | FunFam | LOV domain-containing protein | 379 | 542 | - | - | |
| Vivi102g00068 | 926 | MobiDBLite | consensus disorder prediction | 297 | 358 | - | - | |
| Vivi102g00068 | 926 | ProSiteProfiles | PAS repeat profile. | 107 | 180 | IPR000014 | - | |
| Vivi102g00068 | 926 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 709 | 721 | IPR008271 | GO:0004672|GO:0006468 | |
| Vivi102g00068 | 926 | Gene3D | Transferase(Phosphotransferase) domain 1 | 674 | 891 | - | - | |
| Vivi102g00068 | 926 | ProSiteProfiles | PAS repeat profile. | 389 | 462 | IPR000014 | - | |
| Vivi102g00068 | 926 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 408 | 504 | IPR035965 | - | |
| Vivi102g00068 | 926 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 128 | 220 | IPR035965 | - | |
| Vivi102g00068 | 926 | Pfam | Protein kinase domain | 593 | 877 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vivi102g00068 | 926 | ProSiteProfiles | PAC domain profile. | 181 | 235 | IPR000700 | - | |
| Vivi102g00068 | 926 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Vivi102g00068 | 926 | MobiDBLite | consensus disorder prediction | 746 | 765 | - | - | |
| Vivi102g00068 | 926 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
| Vivi102g00068 | 926 | Gene3D | PAS domain | 381 | 542 | - | - | |
| Vivi102g00068 | 926 | Gene3D | Phosphorylase Kinase; domain 1 | 589 | 673 | - | - | |
| Vivi102g00068 | 926 | Gene3D | PAS domain | 121 | 292 | - | - | |
| Vivi102g00068 | 926 | SUPERFAMILY | Protein kinase-like (PK-like) | 569 | 904 | IPR011009 | - | |
| Vivi102g00068 | 926 | ProSiteProfiles | PAC domain profile. | 463 | 517 | IPR000700 | - | |
| Vivi102g00068 | 926 | CDD | STKc_phototropin_like | 588 | 900 | - | - | |
| Vivi102g00068 | 926 | ProSitePatterns | Protein kinases ATP-binding region signature. | 596 | 619 | IPR017441 | GO:0005524 | |
| Vivi102g00068 | 926 | FunFam | Putative LOV domain-containing protein | 121 | 277 | - | - | |
| Vivi102g00068 | 926 | MobiDBLite | consensus disorder prediction | 317 | 331 | - | - | |
| Vivi102g00068 | 926 | PANTHER | FLIPPASE KINASE 1-RELATED | 99 | 893 | - | - | |
| Vivi102g00068 | 926 | SMART | pac_2 | 184 | 226 | IPR001610 | - | |
| Vivi102g00068 | 926 | SMART | pac_2 | 466 | 508 | IPR001610 | - | |
| Vivi102g00068 | 926 | SMART | pas_2 | 109 | 178 | IPR000014 | - | |
| Vivi102g00068 | 926 | SMART | pas_2 | 391 | 460 | IPR000014 | - | |
| Vivi102g00068 | 926 | CDD | PAS | 416 | 504 | IPR000014 | - | |
| Vivi102g00068 | 926 | FunFam | Putative LOV domain-containing protein | 674 | 889 | - | - | |
| Vivi102g00068 | 926 | FunFam | LOV domain-containing protein | 589 | 673 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi102g00068 | 1 | 925 | AGC Kinase Gene Family | AT5G58140 | 69.775 | 0.0 | 1273 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | AGC_RSK-2 | Vivi102g00068 | Pkinase | 2.6e-56 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi102g00068 | K20715 | - | gmx:100804783 | 1479.54 |