Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi102g00066 ATGGCCACACTATTCCGAAAACTACGCGAATCAGCAGCATCGTTTAAACGATCCACCACCACCGCCACAACAACCACCTCCAATAATTCATCACAACGATCTCATCATCATGACGCTCCTTTGGGTTTATTCGACTCACTCCCTTCTGACATACTCCTCAAAATCATACGATTGTTGGAACCTAAACACGCCGCTAAACTCTGCATCGTTTGCAAATCATGGCGATCTCTTGTTTCCGATAACGAACTCTGGGATCATTTTCTTCAGAATCGCCAGCCTCTACACTATGATTCCATTATCTTCTCGGAAACTAAATTAACCTCTGGTTATCCTCTTCCGTTCTTTGTTACTCAAACGCCACGCGTGTTGTCGTTTAAGCATATTTATGGCCAACGGGAACGACTTCCTCCTGCTGTTATCATCGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGAGGAGCGTCCATTGGGGCGAACTCCTACCTTTTTGGAATTTGGTAACGTGGAGACACCGATATATACTAGGCTTCGACATTTTTTTGGGACCGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAAGCAGTTGTTGTTTCTTTACCAATATGCCACTATGATGATACCGAATCAGCCAGAGCATCAAGACAGCAGCTTAAAGATGCAATCTGTGCTGCTCTATTTGACCTGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGAATATCTATTAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAGCTTAAACTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTGGCCTATGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGGTGAAGGGAGGTATACACTCTCGAAAGAGCGGTTTCAAACAGGAGAGATTTTATTCCAGCCACGTCTTGCTGGGGTTCGAGCAATGAGTTTGCACCAGGCCACAGCTCTCTGTGTGGACCATTGCTATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCAGGAGGTTCTGCGTGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACTTCCTCCTGATATGTCGAATGGAATCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCTGCCCCCTGGTGTACAACAAAGAAGCAGTTCCGTCAGAAGTCTAAACTCAACCGAATATGGTGA 1428 0.4426 MATLFRKLRESAASFKRSTTTATTTTSNNSSQRSHHHDAPLGLFDSLPSDILLKIIRLLEPKHAAKLCIVCKSWRSLVSDNELWDHFLQNRQPLHYDSIIFSETKLTSGYPLPFFVTQTPRVLSFKHIYGQRERLPPAVIIDGGSGYCKFGWSKEERPLGRTPTFLEFGNVETPIYTRLRHFFGTVYGRMKVKPSSQAVVVSLPICHYDDTESARASRQQLKDAICAALFDLNVPAVCALNQATLALYAAKQTSGISINIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNSLNFESLYTVRTLKEKLCYVAYDYEAELLKDTQASFEAGEGRYTLSKERFQTGEILFQPRLAGVRAMSLHQATALCVDHCYSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLLPPDMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPAPWCTTKKQFRQKSKLNRIW 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi102g00066 475 Gene3D - 139 467 - -
Vivi102g00066 475 Pfam F-box-like 45 86 IPR001810 GO:0005515
Vivi102g00066 475 ProSiteProfiles F-box domain profile. 41 87 IPR001810 GO:0005515
Vivi102g00066 475 MobiDBLite consensus disorder prediction 15 37 - -
Vivi102g00066 475 SMART actin_3 136 475 IPR004000 -
Vivi102g00066 475 Gene3D - 30 111 - -
Vivi102g00066 475 SUPERFAMILY F-box domain 39 99 IPR036047 GO:0005515
Vivi102g00066 475 Pfam Actin 212 461 IPR004000 -
Vivi102g00066 475 MobiDBLite consensus disorder prediction 15 36 - -
Vivi102g00066 475 CDD NBD_sugar-kinase_HSP70_actin 139 283 - -
Vivi102g00066 475 Gene3D - 243 440 - -
Vivi102g00066 475 SUPERFAMILY Actin-like ATPase domain 253 462 IPR043129 -
Vivi102g00066 475 SUPERFAMILY Actin-like ATPase domain 137 256 IPR043129 -
Vivi102g00066 475 PANTHER ACTIN 181 467 IPR004000 -
Vivi102g00066 475 Gene3D Actin; Chain A, domain 4 286 368 - -
Vivi102g00066 475 SMART fbox_2 47 87 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi102g00066 185 458 Cytoskeleton Gene Families AT3G12110 31.338 1.33e-36 137