LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi102g00065	ATGGCCACACTATTCCGAAAACTACGCGAATCAGCAGCATCGTTTAAACGATCCACCACCACCGCCACAACAACCACCTCCAATAATTCATCACAACGATCTCATCATCATGACGCTCCTTTGGGTTTATTCGACTCACTCCCTTCTGACATACTCCTCAAAATCATACGATTGTTGGAACCTAAACACGCCGCTAAACTCTGCATCGTTTGCAAATCATGGCGATCTCTTGTTTCCGATAACGAACTCTGGGATCATTTTCTTCAGAATCGCCAGCCTCTACACTATGATTCCATTATCTTCTCGGAAACTAAATTAACCTCTGGTTATCCTCTTCCGTTCTTTGTTACTCAAACGCCACGCGTGTTGTCGTTTAAGCATATTTATGGCCAACGGGAACGACTTCCTCCTGCTGTTATCATCGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGAGGAGCGTCCATTGGGGCGAACTCCTACCTTTTTGGAATTTGGTAACGTGGAGACACCGATATATACTAGGCTTCGACATTTTTTTGGGACCGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAAGCAGTTGTTGTTTCTTTACCAATATGCCACTATGATGATACCGAATCAGCCAGAGCATCAAGACAGCAGCTTAAAGATGCAATCTGTGCTGCTCTATTTGACCTGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGAATATCTATTAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAGCTTAAACTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTGGCCTATGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGGTGAAGGGAGGTATACACTCTCGAAAGAGCGGTTTCAAACAGGAGAGATTTTATTCCAGCCACGTCTTGCTGGGGTTCGAGCAATGAGTTTGCACCAGGCCACAGCTCTCTGTGTGGACCATTGCTATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCAGGAGGTTCTGCGTGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACTTCCTCCTGATATGTCGAATGGAATCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTGTGAGCTATCCACTAAGTCTTTTAAACATTCACATTTTTCTTGCTCCACAGGACCTCACTTTTATGCTGATTAAGTTGGAACATTTTGATGATTGA	1446	0.4357	MATLFRKLRESAASFKRSTTTATTTTSNNSSQRSHHHDAPLGLFDSLPSDILLKIIRLLEPKHAAKLCIVCKSWRSLVSDNELWDHFLQNRQPLHYDSIIFSETKLTSGYPLPFFVTQTPRVLSFKHIYGQRERLPPAVIIDGGSGYCKFGWSKEERPLGRTPTFLEFGNVETPIYTRLRHFFGTVYGRMKVKPSSQAVVVSLPICHYDDTESARASRQQLKDAICAALFDLNVPAVCALNQATLALYAAKQTSGISINIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNSLNFESLYTVRTLKEKLCYVAYDYEAELLKDTQASFEAGEGRYTLSKERFQTGEILFQPRLAGVRAMSLHQATALCVDHCYSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLLPPDMSNGIRVIPPPHGADTAWFGAKLIGSVSYPLSLLNIHIFLAPQDLTFMLIKLEHFDD	481

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi102g00065	481	Gene3D	-	243	440	-	-
	Vivi102g00065	481	PANTHER	ACTIN	181	452	IPR004000	-
	Vivi102g00065	481	Pfam	F-box-like	45	86	IPR001810	GO:0005515
	Vivi102g00065	481	ProSiteProfiles	F-box domain profile.	41	87	IPR001810	GO:0005515
	Vivi102g00065	481	MobiDBLite	consensus disorder prediction	15	37	-	-
	Vivi102g00065	481	Gene3D	Actin; Chain A, domain 4	286	368	-	-
	Vivi102g00065	481	Gene3D	-	139	452	-	-
	Vivi102g00065	481	SUPERFAMILY	Actin-like ATPase domain	253	452	IPR043129	-
	Vivi102g00065	481	MobiDBLite	consensus disorder prediction	15	36	-	-
	Vivi102g00065	481	CDD	NBD_sugar-kinase_HSP70_actin	139	283	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi102g00065	185	452	Cytoskeleton Gene Families	AT3G12110	30.576	1.70e-33	128

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi102g00065	K16616		-	gmx:100804254	678.322

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