Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi102g00062 | ATGGAGGAGCTAAAGCAAGAGCAAGAGATGAGGGAAAGACGAAATCAAGACCGTGAACAATGGCGTGATGGGCGTCTTGGAGAGCATTCTATTTCCAGTCGGTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTTCCAGGATCGTTTGATGATGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTCTCACCCCAGGTTGATGAAAACTTTCTTCTGCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAAGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTTGCATTCATGAACAGAGTTGATGGACAGGCTGCTAAAGACGAAATGCAAGGAGTTGTGGTTTATGAATACGAATTAAAAATTGGATGGGGAAAGTCCGTTGCCCTCCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAAGAGGGTAACACTGTTATCTTGTCGGGCCCATCAGGTCCACCAGTCACATCAGTGCCTAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACACCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCTTGGACGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGGAATCCTCTTTTCAGTTTCTTGTTTGTTCTTGGCTCGAAGGAGCATACCTATTATGTTTGGAGACTGTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACCGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCTGCATTACCTATAACCAGAAGTCCAGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGGAGCAGGCGTGTAGAACCGGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTACGTGCTTTAACATTAGAGAGAAGTCAGATAAAGGGGGCTATGGGGTTTTCTTTGGATAACGCCGATGCAGCTGGCGAGATAGTTGAAGTGTTGACGGAATCCTTGACACTTAAAGAAACCCCTATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGGAGCATAATGGGGCGTATTACTGCTGAAGCCCTTAAGGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCCACTTTCCTTAGACCTGGAAACTCTGGTGTAATACCATTCCACTCCATATGTGGTGATGCACCTGAGATTGAGCAAAAGATCACTTCTGAAGATGCTGTTGTTGGTGACAAGACCGACCAAGATGCTGCATTGTCAATGGGTCGAGGAGCTGCAACGAAAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGGCACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGAATTGAAATATCCCCTCAACCAAGCAAGTTCAGGGAAATATACAAGTAGTCGACCAGAAACAAGTGCAGATCCTGAACCAATGGGAATATCTGGATTGAATCACTATGGGGATGAAGATTTGCAGTTGCAAGGCAAAGGTTCTGCACCTTTAGCGCCAACACTTTCTATTCCACAGCCTGAACTTAAAGCCTTCGCAAAAAGAGAGAAGAATGATCTGATTTTGCCAGCTTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAGGGAAAGGTGGAAAAAATCTTGGGTTAAGCTACTCATCTTCGGGTAGTGAGAATGTGGGTGATGGCCATCTTAAAGCTGATGAATCAGAGGCTGCTGCTGATTCAAGTTTTCCAGCTCATGCTTACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAATTCTGAGGAAATTGAGAAAAAAGTTCTGATGCATCGAAAAAGGCTGCAAGTGGAGTACGGTATATCAGATTCTAGCGAAGATGGCCAAGGCAGTATTGCAGGGAGAACATCTTCAGAGAGGAGGGATAGGCATGATGTCTCAAGGAAGCGACACCGCAGCCATAGTCCAAGTGGTAGTCCACGACAGAAACCATCAAGCAAAGACAGAGATAGAGAACGTGATTTAGAAAGGGAACGAGAAAGAAAAAGAGATAAAAATTATGATTTTGATGGTGATAGAGGAAGAGACCGGCTCAGGGAGAAGAGTGGAAGCAGGGAGAGGGATGATTATGATAAGGATAGAAGCAGGGACAGGGACAGAGATAGGAGAAGACGCGCCAAATAA | 2550 | 0.4427 | MEELKQEQEMRERRNQDREQWRDGRLGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRVDGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFSFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPITRSPEHDKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKGAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSEDAVVGDKTDQDAALSMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYPLNQASSGKYTSSRPETSADPEPMGISGLNHYGDEDLQLQGKGSAPLAPTLSIPQPELKAFAKREKNDLILPASKWAREDDESDDEQGKGGKNLGLSYSSSGSENVGDGHLKADESEAAADSSFPAHAYSGMNEEQRQKLRRLEVALIEYRESLEERGIKNSEEIEKKVLMHRKRLQVEYGISDSSEDGQGSIAGRTSSERRDRHDVSRKRHRSHSPSGSPRQKPSSKDRDRERDLERERERKRDKNYDFDGDRGRDRLREKSGSRERDDYDKDRSRDRDRDRRRRAK | 849 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 291 | 315 | - | - | |
| Vivi102g00062 | 849 | CDD | RRM_SR140 | 59 | 142 | IPR035009 | - | |
| Vivi102g00062 | 849 | Pfam | cwf21 domain | 694 | 738 | IPR013170 | - | |
| Vivi102g00062 | 849 | ProSiteProfiles | SAP motif profile. | 511 | 545 | IPR003034 | - | |
| Vivi102g00062 | 849 | SMART | cwf21_2 | 693 | 742 | IPR013170 | - | |
| Vivi102g00062 | 849 | Gene3D | - | 317 | 463 | IPR008942 | - | |
| Vivi102g00062 | 849 | SMART | surpneu2 | 207 | 261 | IPR000061 | GO:0003723|GO:0006396 | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 634 | 650 | - | - | |
| Vivi102g00062 | 849 | Pfam | CID domain | 324 | 452 | IPR006569 | - | |
| Vivi102g00062 | 849 | Coils | Coil | 694 | 714 | - | - | |
| Vivi102g00062 | 849 | SUPERFAMILY | Surp module (SWAP domain) | 183 | 264 | IPR035967 | GO:0003723|GO:0006396 | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Vivi102g00062 | 849 | SUPERFAMILY | ENTH/VHS domain | 321 | 458 | IPR008942 | - | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 558 | 612 | - | - | |
| Vivi102g00062 | 849 | ProSiteProfiles | SURP motif repeat profile. | 209 | 252 | IPR000061 | GO:0003723|GO:0006396 | |
| Vivi102g00062 | 849 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 141 | IPR000504 | GO:0003723 | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Vivi102g00062 | 849 | SMART | 558neu5 | 324 | 459 | IPR006569 | - | |
| Vivi102g00062 | 849 | PANTHER | RNA PROCESSING PROTEIN LD23810P | 1 | 746 | - | - | |
| Vivi102g00062 | 849 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 62 | 134 | IPR000504 | GO:0003723 | |
| Vivi102g00062 | 849 | SMART | rrm1_1 | 61 | 137 | IPR000504 | GO:0003723 | |
| Vivi102g00062 | 849 | Pfam | Surp module | 207 | 259 | IPR000061 | GO:0003723|GO:0006396 | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 289 | 315 | - | - | |
| Vivi102g00062 | 849 | SUPERFAMILY | RNA-binding domain, RBD | 53 | 148 | IPR035979 | GO:0003676 | |
| Vivi102g00062 | 849 | CDD | cwf21_RRC1-like | 693 | 742 | IPR047491 | - | |
| Vivi102g00062 | 849 | ProSiteProfiles | CID domain profile. | 317 | 462 | IPR006569 | - | |
| Vivi102g00062 | 849 | Gene3D | - | 693 | 744 | - | - | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 634 | 697 | - | - | |
| Vivi102g00062 | 849 | Gene3D | - | 1 | 143 | IPR012677 | - | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 785 | 842 | - | - | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 741 | 849 | - | - | |
| Vivi102g00062 | 849 | MobiDBLite | consensus disorder prediction | 565 | 579 | - | - | |
| Vivi102g00062 | 849 | Gene3D | Surp module | 195 | 264 | IPR035967 | GO:0003723|GO:0006396 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi102g00062 | 57 | 137 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 32.099 | 2.75e-06 | 49.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi102g00062 | K12842 | - | gmx:100776093 | 1404.04 |