Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi102g00011 ATGATTGAAGGAATAATGGCGTCGAATGAGAATGTGCCGGTTCGCGAGTTTTGCGCAAATGGAAGCTGCATGAACACAAAGGAAGTTGAAGCCAAGCTTGATGAAGGAAATATTCAAGACGCAGAAACTGCATTGCAAGAAGGTTTATCTCTTAGTTCCGAGGAAGCAAGAGCTCTACTCGGAAAATTTGAGTATCAAAGAGGTAATGTCGAGGGCGCGCTTCGTGTGTTTGAAGGGATCGATCTTACAGAAGCCATACAGCGACTGCAAACTACCCTTTCGGAAAAGCCACCTATCAAGAAAGGTTCTTCTCGCGCGGAGTCACCTTCTTCGGTATCTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTAGGGAAATTTAATGAAGCTGCTAATGAATGCAAAGAAGTTCTAGATGCTGTTGAGAAGATATTCGGTCAGGGTATACCCGATACTCAAGTGGACAATAGATTGCAGGAGATTGTAAGCTGTGCTGTAGAGCTTCTTCCAGAGCTTTGGAAACAGGCCGGTTGCTATCACGAGGCGATAACAGCTTACAGGCACGCCCTTCTCAGTCAATGGAATCTTGATAATGATTGCTGTGCGAGAATTCAGAAAGCGTTTGCAGTATTTTTGCTTTACAGTGGGGTGGAGGCAAGTCCGCCTAGTTTTTCCGTTCAGATTGAAGGGTCTTTTGTGCCAAAAAATAATCTGGAAGAGGCGATTCTTCTTCTTATGATTCTTTTAAGGAAGTTTAGCCTAGGCAAGATAAAATGGGATCCTTCGATTATGGAACACCTAACTTTCGCACTTTCAGCATGTGGCGAGACATCTATTTTGGCGAAACAATATGAAGATTTGATGCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTAGCTCTATGTTTTAGTGCGGATGGACAAAATAAAAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCATAAACATGAGCGACCGAACGATGTGATATCGTTATTATTGGCTGCAAGGATTTGCAGTGAGGGTTCTCATCTTGCTGCAGAGGGAGCAGGGTATGCACAGAGGGCAATCGAGAATGCTCGGGGCTTAAACGAGCATTTGAAAGGCGTTGGTCTTCGGATGCTTGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTGCATCCGATTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAGTCATTAGAAGAGGCACTTATATTAGAGCAAAACAATTTCGATCTAATCTTTGAATTGGCTATTCAATATGCCGTGCACCGAAACTTGGCTGTTGCTTTACGTTATGCCAAGGAGTTCTTCGACAAAACTGGTGGCTCCAAATTGAAAGGTTGGAGATTACTTTCTCTGGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAATGGTGACTGATGCTGCTATAGATGAGACCGCAAAATGGGAGCAGGGGCCTCTACTCAGGTTAAAAGCCAAGCTGAAGATCGCTGAACTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTCGCATTGGTTCAAGCCCAGAAGAAATCCGCTGGAGCTCAAAAACTTAGTTCACAGGATGCGGAGGATCAAATAAACGAGTTTGATGTTTGGCACGGTCTAGCAAATTTATATGTAAGCCTTTCGCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGCAATACTCTGCGGCAACAATACAAACCGAAGGTGTCGTGTTTGACGGCCGTGGACAATACAACGAAGCCCTTGCGGCTGCTGCTAATTCTGTCCCAATTGAACCAAACCATGTTCCAAGCAAGATCTTGATGGCTTCTTTGATACTTAAAAATGGTTCCAAAGCATTACCTGTTTGTAGGAGCTTACTTTCTGATGCACTAAGAGTAGAACCAACTAACCGCAGTGCTTGGTATTACCTCGGATTAACTCACAGGGATGATGGTCGAATAGGTGATGCTGCTGATTGCTTCCAAGCAGCTTCAATGCTTGAAGAATCTGATCCCGTTGAAAGCTTTAGCTCTATGCTTTGA 2094 0.4379 MIEGIMASNENVPVREFCANGSCMNTKEVEAKLDEGNIQDAETALQEGLSLSSEEARALLGKFEYQRGNVEGALRVFEGIDLTEAIQRLQTTLSEKPPIKKGSSRAESPSSVSQHAASMVLEAIYLKAKSLQKLGKFNEAANECKEVLDAVEKIFGQGIPDTQVDNRLQEIVSCAVELLPELWKQAGCYHEAITAYRHALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSFSVQIEGSFVPKNNLEEAILLLMILLRKFSLGKIKWDPSIMEHLTFALSACGETSILAKQYEDLMPGVYHRIDRWNSLALCFSADGQNKSALNLLRKSLHKHERPNDVISLLLAARICSEGSHLAAEGAGYAQRAIENARGLNEHLKGVGLRMLGLCLGKQAKVAASDFERSMLQSKALQSLEEALILEQNNFDLIFELAIQYAVHRNLAVALRYAKEFFDKTGGSKLKGWRLLSLVLSAQKRFSEAEMVTDAAIDETAKWEQGPLLRLKAKLKIAELRPMDAIEIYRYLLALVQAQKKSAGAQKLSSQDAEDQINEFDVWHGLANLYVSLSHWKDAEICLQKARELKQYSAATIQTEGVVFDGRGQYNEALAAAANSVPIEPNHVPSKILMASLILKNGSKALPVCRSLLSDALRVEPTNRSAWYYLGLTHRDDGRIGDAADCFQAASMLEESDPVESFSSML 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi102g00011 697 Gene3D Tetratricopeptide repeat domain 30 216 IPR011990 GO:0005515
Vivi102g00011 697 Pfam Tetratricopeptide repeat 30 78 - -
Vivi102g00011 697 SUPERFAMILY TPR-like 121 446 IPR011990 GO:0005515
Vivi102g00011 697 MobiDBLite consensus disorder prediction 93 112 - -
Vivi102g00011 697 SUPERFAMILY TPR-like 409 509 IPR011990 GO:0005515
Vivi102g00011 697 Gene3D Tetratricopeptide repeat domain 463 692 IPR011990 GO:0005515
Vivi102g00011 697 Gene3D Tetratricopeptide repeat domain 245 460 IPR011990 GO:0005515
Vivi102g00011 697 SMART tpr_5 551 584 IPR019734 GO:0005515
Vivi102g00011 697 SMART tpr_5 655 688 IPR019734 GO:0005515
Vivi102g00011 697 SMART tpr_5 585 618 IPR019734 GO:0005515
Vivi102g00011 697 SMART tpr_5 305 338 IPR019734 GO:0005515
Vivi102g00011 697 SMART tpr_5 121 154 IPR019734 GO:0005515
Vivi102g00011 697 SUPERFAMILY TPR-like 515 685 IPR011990 GO:0005515
Vivi102g00011 697 PANTHER PROTEIN NPG1 6 694 IPR043376 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi102g00011 10 697 Calmodulin-binding Proteins AT2G43040 69.653 0.0 959