Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1024g00025 ATGGAAATCTGTTCAAAACCAAACAAACCTTTCATTGTTGATGAAGCTACCTGGGTTCAATGCAGCGGAGTTCTCCCATTCGTTCCCGACGTTAATTCGCGTGTTTACTACTTTCCCCAAGGTCATTTGGAAAGCATGTTTATCAGCTCTCAACAGTCTTCAATCAATGAAGCTCGTCCATTCTTGTGTGAGATCGTGAAGATTTCCTATCTTGCGGATGCATACACGGAAGAAATGTACTCCAACATCACTCTCAAACCCATTCGTGAAGATGAAACCGTTTTGGATAAATTTCACATTCGCAACGATCTTGATGATGATTTTTTTGGGAAAGAAATATTTCAGACCCATATAGACGATCGACTCTTCATCCCTGTGGCTAACAATGGTATTATTGAAGGGTTTAACGGTAACTCGCTAACCTTGGTGGATGTTGCAAACAAGAAGTGGTCAGTGAAATGTAAATTCTCAACTTCAAAGAACGGATACAATCTGTCCGGTAACTGGAACACGATGTGTCAGGAAAAGAAAATAGCTGCTGGCGATACTGTATTCTTTACTAGGACTGGTGATGGTGACGATCTCTCTGTCTCTTTCAGAAAGAAGGGGAATTTTTCGGCGTTCGCCTACACACATTCACGGTCTCAGAAACGTTTCAAAAAGGAGGTTTCGAAGGCGGTTGCTCGTGCACAGAGTGATAGCACTTTCAAGGTCAGGTTCTACCCTAACTGGGTAGACTTTTTGGTAGATCCGGATTTTCTTTTCAATTCTAATAAAAATCTTATGACCTCTGATTTAAAAATCCAAAAACGGAATTCTTCAAAGTTGTTTGGGAACTTAAGGACTGGAAAATTGTCAGAAGCTGTGTCTGCAGTAGATGATTTAAGCTGGAGGGCTGCCCAGGTTATTTGGGATAATGATGGCAGTCAAATTTTAGTTAATTCTTGGGATGTAGTTCCATCCGATTAG 969 0.4097 MEICSKPNKPFIVDEATWVQCSGVLPFVPDVNSRVYYFPQGHLESMFISSQQSSINEARPFLCEIVKISYLADAYTEEMYSNITLKPIREDETVLDKFHIRNDLDDDFFGKEIFQTHIDDRLFIPVANNGIIEGFNGNSLTLVDVANKKWSVKCKFSTSKNGYNLSGNWNTMCQEKKIAAGDTVFFTRTGDGDDLSVSFRKKGNFSAFAYTHSRSQKRFKKEVSKAVARAQSDSTFKVRFYPNWVDFLVDPDFLFNSNKNLMTSDLKIQKRNSSKLFGNLRTGKLSEAVSAVDDLSWRAAQVIWDNDGSQILVNSWDVVPSD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1024g00025 322 SUPERFAMILY DNA-binding pseudobarrel domain 108 202 IPR015300 -
Vivi1024g00025 322 CDD B3_DNA 108 201 IPR003340 GO:0003677
Vivi1024g00025 322 Gene3D - 105 209 IPR015300 -
Vivi1024g00025 322 Pfam B3 DNA binding domain 136 201 IPR003340 GO:0003677
Vivi1024g00025 322 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 320 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1024g00025 322 SMART B3_2 109 203 IPR003340 GO:0003677
Vivi1024g00025 322 ProSiteProfiles B3 DNA-binding domain profile. 140 203 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1024g00025 11 320 B3 DNA Binding Superfamily AT4G23980 25.723 2.23e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1024g00025 B3 6.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1024g00025 - - vvo:131630325 644.425