Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1024g00016 ATGTCTGGTGAAGAACCCGTTGTTGCAGCCGAGCCCGTTGTTGCTGCACCTGGAATTCCAGGGGAGCCAATGGACATCATGACTGCTGTTCAGCTTGTGCTGAGAAAGTCACGTGCTTACGGTGGTCTTGCACGAGGTCTTCATGAAAGTGCTAAAGTGATTGAGAAACATACTGCACAGCTATGTGTCCTAGCTGAAGATTGTGACCAACCTGATTATGTCAAATTGGTCAAGGCCCTTTGTGCTGAACACAATGTTAGTTTGTTGACTGTTCCAAATGCGAAGACCCTTGGAGAATGGGCTGGCTTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGCGTGGTCGTCAAGGATTTCGGCGAGGAACATGAAGCATATAATGTTGTTTTGCAACATGTGAAATCTAACTGA 432 0.4653 MSGEEPVVAAEPVVAAPGIPGEPMDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHTAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1024g00016 143 FunFam 40S ribosomal protein S12 10 143 - -
Vivi1024g00016 143 PRINTS Ribosomal protein S12E family signature 47 63 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi1024g00016 143 PRINTS Ribosomal protein S12E family signature 33 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi1024g00016 143 PRINTS Ribosomal protein S12E family signature 113 126 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi1024g00016 143 PRINTS Ribosomal protein S12E family signature 88 109 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi1024g00016 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 29 122 IPR004038 -
Vivi1024g00016 143 SUPERFAMILY L30e-like 23 141 IPR029064 -
Vivi1024g00016 143 Gene3D - 10 143 IPR029064 -
Vivi1024g00016 143 PANTHER 40S RIBOSOMAL PROTEIN S12 19 142 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1024g00016 19 143 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 5.83e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1024g00016 K02951 - gmx:100786733 258.84