Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1024g00011 ATGAAGGTGCAAGGTTGTGAGGTTGAAGCCATTGGCATAAACTACAAGATCCACACAAACAAAACAGAACACCCTTTTAAAATCTTCAGCAAATCACCACAGCTAGATAGTACTGATGGTCAAGAAACAGAAGATGAGGAAGAAGGAACAAGAGGTGAAAAAAGTTGCAGTGGAGTGAGGCGTGTACTCAAGAATGTGAGTTTTCATGCAAAACCATGGGAGATTCTGGCAATTGTTGGACCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGGTAAACACACTCCACAAAAAGGGTCAGTGTTGTTGAACCAGAAACCTGTTGAAAAATCTCAGTTCAGAAAGCTATCAGGTTATGTTACTCAAAAGGATACTTTGTTTCCCTTACTTACAGTTGAAGAAACCATGATGTTCAGTGCAAGGCTAAGGCTAAAACTTCCTCAACAACAACTATGTTCAAGGGTCAAGTCGCTGATTCAAGAGCTTGGACTTGATCATGTTGCTGGGACTAGAATTGGCGACGATCGAGTTCGAGGTATATCAGGCGGGGAAAGGCGCAGAGTTTCTATTGGTGTAGAAATCGTGCATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCTGGGCTTGATAGTACTTCAGCTTTGCAAATTATTGATATGCTTAAGGTTATGGCTGAAACTAGGGGAAGAACTATAATACTAAGTATTCACCAACCTGGTTTCAGAATTGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCTAATGGTTCTGTGCTACATCATGGAAGTGCTGATTTACTGAGTTTGAATTTGAGATTAATGGGTCTAGAGCTTCCTCTTCATGTCAATGTAGTTGAATTTGCTATTGATTCTATTGATACCATTCAGCAACAACAACAATGTCAGGTGGAAACCGAAACGCCGAGGCTATTGCAAGGGACAATGCAACAGAAGAAAGGTGCTGATAATGAACAACAACCAGGTGAGAGTAAAATTGGTAAGTTCACTTTGCAGCAGCTATTTCAACAATCTAAAGTAATTGATGAAGATACCATCAATAATAAAGGAACTGGAGTGGATTTCACTTATGATTTTGCGAATTCTAGATTGAGAGAAACTATGATTCTAACTCATAGATTCTCCAAAAACATATTTCGTACAAGAGAGCTATTTGCATGTAGGACGATTCAGATGCTAATTTCAGGACTAGTTTTAGGATCAATCTTTTGTAACCTCAAAGATGATCTAAAAGGAACAGAAGAAAAGGTTGGTCTATTTGCTTTCGTATTAACCTTTCTGTTATCAAGCAGCATAGAAGCTCTCCCAATTTTTCTACAAGAAAGGGAAATTCTCATGAAAGAAACATCTTGCGGAAGCTACCGCGTGTCATCTTATGCTATTGCAAATGGACTAGTTTATTTGCCATTTCTTCTAATCCTAGCCATTTTGTTCACAGTTCCTTTATACTGGCTTGTTGGTCTCAACACAAACTTCACTGCTTTTCTGCACTTTCTGTTACTGATATGGCTTATTCTTTATACAGCTAATTCAGTTGTGGTGTGTTTCAGTGCTCTTGTGCCTAATTTCATTGTTGGGAATTCAGTGATTAATGGTGTTATAGGTTCTTTCTTTTTGTTCTCTGGTTACTTCATATCAAACCATGAGATTCCTAGTTACTGGATTTTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTGATCAATGAGTTCTCAAACTCGACAAAGTGTTTGGAGTACATGTTTGGTACATGTGTGATGAAGGGAGAGGATGTGCTTAAAGAAGAAGGGTATGGAGGGGAAGGTAGCAGATGGAAGAATGTTGGTGTCACTGTTGGCTTCATCATGGTTTACAGATTCATTTCTTATGTTATTCTGAGATACAAATGCTCAGAGAGAAGGGTCTAG 1950 0.3856 MKVQGCEVEAIGINYKIHTNKTEHPFKIFSKSPQLDSTDGQETEDEEEGTRGEKSCSGVRRVLKNVSFHAKPWEILAIVGPSGAGKSSLLEILAGKHTPQKGSVLLNQKPVEKSQFRKLSGYVTQKDTLFPLLTVEETMMFSARLRLKLPQQQLCSRVKSLIQELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEIVHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGSADLLSLNLRLMGLELPLHVNVVEFAIDSIDTIQQQQQCQVETETPRLLQGTMQQKKGADNEQQPGESKIGKFTLQQLFQQSKVIDEDTINNKGTGVDFTYDFANSRLRETMILTHRFSKNIFRTRELFACRTIQMLISGLVLGSIFCNLKDDLKGTEEKVGLFAFVLTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTVPLYWLVGLNTNFTAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVINGVIGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSTKCLEYMFGTCVMKGEDVLKEEGYGGEGSRWKNVGVTVGFIMVYRFISYVILRYKCSERRV 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1024g00011 649 CDD ABCG_EPDR 50 266 - -
Vivi1024g00011 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 271 IPR027417 -
Vivi1024g00011 649 FunFam ABC transporter G family member 5 48 308 - -
Vivi1024g00011 649 Pfam ABC-2 type transporter 377 585 IPR013525 GO:0016020|GO:0140359
Vivi1024g00011 649 Gene3D - 52 323 IPR027417 -
Vivi1024g00011 649 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 14 635 - -
Vivi1024g00011 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 284 IPR003439 GO:0005524
Vivi1024g00011 649 ProSitePatterns ABC transporters family signature. 183 197 IPR017871 GO:0005524|GO:0016887
Vivi1024g00011 649 MobiDBLite consensus disorder prediction 26 56 - -
Vivi1024g00011 649 SMART AAA_5 72 290 IPR003593 GO:0016887
Vivi1024g00011 649 Pfam ABC transporter 63 211 IPR003439 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1024g00011 61 289 Calmodulin-binding Proteins AT2G36910 23.265 2.18e-14 75.1