Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1024g00005 ATGGATGATGAAACTCATACTACTTTGCCAAATGGATTCACCACAGAAATTCCTGAAACTCAATCTTTAAAAACAATCAACAATCATAATAACAACAACAACAACACTACCACCAACAATAAAGAACAAGACCGTTTTCTTCCCATAGCAAACGTTGGTAGAATAATGAAAAAAGTGATCCCAGCAAACGGCAAAATCTCAAAGGACGCAAAAGAAACAGTTCAAGAATGTGTCTCTGAGTTCATAAGTTTCGTCACCGGCGAAGCCTCCGATAAATGTCAAAGAGAAAAGAGGAAAACTATCAATGGTGATGATATCATTTGGGCTATTACAACTTTAGGGTTTGAAGATTACGTTGAACCGTTAAAATCTTATCTTCAAAAATATAGAGATATCGAAGGTGAGAAAGTTAATGTCCCTAAACAACAAAGATCTGAACAAAGGCTACATCAACAACATCAACATCAACAGCATCAACAACATAATCAAGATGAATTAAATAATCAACATTTCAATAATAGTGTATATACTTCAACAAATCTCATTTCTCAACCCTCTTATGTCACCAATGATCAACCATTTCCGTTACCTTTCTCGTCCAATTCGATTCAAAAACAGTTACGGCCGCAAGATCAGATCGATTCCTTAGGCCATTGGTATGAATGA 666 0.3544 MDDETHTTLPNGFTTEIPETQSLKTINNHNNNNNNTTTNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHQQHQHQQHQQHNQDELNNQHFNNSVYTSTNLISQPSYVTNDQPFPLPFSSNSIQKQLRPQDQIDSLGHWYE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1024g00005 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 170 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi1024g00005 221 MobiDBLite consensus disorder prediction 199 221 - -
Vivi1024g00005 221 FunFam Nuclear transcription factor Y subunit B-3 35 162 - -
Vivi1024g00005 221 MobiDBLite consensus disorder prediction 139 163 - -
Vivi1024g00005 221 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vivi1024g00005 221 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Vivi1024g00005 221 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Vivi1024g00005 221 SUPERFAMILY Histone-fold 43 162 IPR009072 GO:0046982
Vivi1024g00005 221 Gene3D Histone, subunit A 32 173 IPR009072 GO:0046982
Vivi1024g00005 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Vivi1024g00005 221 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi1024g00005 221 MobiDBLite consensus disorder prediction 139 160 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1024g00005 41 219 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.935 2.30e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1024g00005 CBFD_NFYB_HMF 3.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1024g00005 K08065 - gmx:100778216 291.967