Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1018g00018 ATGGAAGAAGAACAGGATCGAATTCTTCTTACTACTTTGGGCGTTAAATCCGCCAATCCTGAAGATATCGAACGCCGCGTTTTGGAAAAGGCTAGGAATGGTGCAGTTACTGTTACTGAAGCTGAAGGGAACACTGAGGAAAACCAATGTTCTACTACTTTACCTGAAACCCTTGATCCGTTATCTGAACTTCATCAGAAGTTGAGGGCTATAGAATTTGAAATTGGCGCGGTTTCTTCGACTATTCAGCGGCCGAGAGACGTTGATAAGGATGGAGAAGGTGGTGATGTTGACGAGGAGGATTTGGAGGAAGGGGCTGACGAGGGAAATGGTTCTGAACTTCAGCGTGTTCTTGCTGCCGATAGGCTGAGAAGTCTTGAGAAAACGAAGGCGCAACTTGAGAAAGAGCTTTCTAGATTTTCTAAGGATGGTGATCCGCAAAGCATTGAGCGGAGAAAAGTCATATTTAGTTTAGTTAAGGAAGATAGGAAACCGAAGAAGAAGCTTAAAGATGATAGGAAATTGAGCAAGAGGCCTGCAAAACGGTTTAAGACGGTCTCGTTTGATGATGATGCTGATTTTGATGCTGTTCTCGATGCAGCCTCTACGGGCTTTGTAGAAACCGAAAGGGATGAATTGGTTAGAAAAGGAATTTTCACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGTATTCAACAACCTGAAGCATCAACTAGTCATAATGCTGCTGAGCAGGGAAATTCCAACAATCTTGTTTTGTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGCCCAACATCCAAGCTGCTTGAGCCTGGAGAGGTACCGAAGCTTGATGCGCCCACTATTCCTTTTCGCAGGCTTAAGAAACCACTACAATTACCCAAACCTCAAGACAGTGAGGGGGATCTAAATACAGATTCAAAAAAGAAAAAGAGGCGACCTTTGCCTGGTAGGAAATGGACCAAACGTGTTTCTTCTGAGGATAGACAACTGGAAGGAAGTGAAAATGCTAATGGTGGCTTGGACACTTCCAGTTGTGATAGTTTAGAAGGCCATGATGTAGAACTTTCTGAACATGATTCTTCTTATGTCACATTAGAAGGTGGACTGAAAATCCCTGAGAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTATGGGAGTTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAAATGGGTCTTGGGAAAACTATACAAGTATTATCATTTCTGGGTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTCACACTCCTGCGACAGTGGAAAAGGGAAGCAAAAAAGTGGTATCCTAAATTCCATGTAGAACTTGTACATGATTCTGCGCATGATCTGGCTTCTGAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGCAATAATTCAAGCGACAATGATTATGAGAGAAGTGTACCATCTAGAAACCCAAGAAAGTGGAAAACCCTGATAAACCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTGACTTTGAATGGGGTTATGCAGTTCTTGATGAAGGACATAAAATAAAGAATCCAAATGCAGAAGTCACCCTAGCTTGCAAACAGCTACAAACTGTACACCGCATCATCATGACTGGTGCACCTATTCAGAACAAACTGAGCGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCAGAGTTTGCAGTTCCTATAGCTGTTGGTGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTTGTACTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCCCAACTTCCCAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACACCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCCAGCACTGAAGTGGAAGAAATATTGGATGGAGGCAGGAATTCGCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCAGACCTACTTGAAAGGGAACATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTCAATGTTTGGAAGGAGCAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATATATACCGGAGAATGGATGGTCTCACTCCTGTAAAACATAGAATGGCTTTAATGGATGAATTTAATGCCTCAAGTGATATTTTTGTTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGAACAAATCTTACTGGTGCAGATAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCGTGGCGAATTGGTCAGAAACGGGATGTGACAATATATAGGTTAATCACACGTGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTCACCAATAAGATCTTGAAGAACCCACAACAGAAAAGGTTCTTCAAAGCCCGAGATATGAAAGATCTTTTTGTATTGAATGTGGATGGAGAAACCGGTTCAACAGAGACGTCGAATATTTTCAGTCAAATAGCTGAAGATGTAAATATTATTGGGACACATCAAGATAATCAGGATAATGAATCTAGTCATACTGCTGAATTGGGTTCCGAAGATGCTGCAGTTGGTAATGATGGCAAATCCCAAGGAGGATCTTCAAGAGGAAAAGGGAAAGAGAAGGTTGACAAAAGTAATGGAGTTGGTGAAGAAGCGAATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGGATGCCCATGATGAGGAGAAGATGAGACTTGACGAGCAAGCTTCCCAGGTTGCACAAAGAGCAGCAGAAGCTTTACGTAAGTCACGAATGATTCGAAGCAACGAAAGCGTCTCTGTTCCTACATGGACCGGAAGGTCAGGAGCTGCTGGTGCACCATCGTCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCCGGTTGCTAAATAATAGCAAAGCTTCTAATGAATCACCCAGCAGTGGATCTAACAAATTCAATGGATATGCTGCTGGGACGTCTTCTGGTAAGGCATTATCGTCTGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCGTCAGTGTTGGGCTTGAGCATCAGTTAGGAATGTCGTCAACTTCCACAAATCATTCAAGAGATGTTAGAACATCCAGGGCACCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATTCGAAAAATCTGCTCCTTTTTCCAACAGAAAGGTGGCAGTTGTAGTTCATCCAGCATAGTTCAGTATTTCAAGGACAGGATCCCGTCAAAAGATCTTGCCCTGTTCAAGAACATGTTAAAGGAAATAGCCACTCTGCAGAAAGGATCAAATGGTTCCTATTGGGTTCTGAGGCCAGAATATCAAGAATAG 3651 0.4224 MEEEQDRILLTTLGVKSANPEDIERRVLEKARNGAVTVTEAEGNTEENQCSTTLPETLDPLSELHQKLRAIEFEIGAVSSTIQRPRDVDKDGEGGDVDEEDLEEGADEGNGSELQRVLAADRLRSLEKTKAQLEKELSRFSKDGDPQSIERRKVIFSLVKEDRKPKKKLKDDRKLSKRPAKRFKTVSFDDDADFDAVLDAASTGFVETERDELVRKGIFTPFHKLKGFERRIQQPEASTSHNAAEQGNSNNLVLSSVERAARSFSQAARARPTSKLLEPGEVPKLDAPTIPFRRLKKPLQLPKPQDSEGDLNTDSKKKKRRPLPGRKWTKRVSSEDRQLEGSENANGGLDTSSCDSLEGHDVELSEHDSSYVTLEGGLKIPENIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELVHDSAHDLASEKKRAESDGTDSESNNSSDNDYERSVPSRNPRKWKTLINRVMRSESGLLITTYEQLRILGDQLLDFEWGYAVLDEGHKIKNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKHRMALMDEFNASSDIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQIAEDVNIIGTHQDNQDNESSHTAELGSEDAAVGNDGKSQGGSSRGKGKEKVDKSNGVGEEANILKSLFDANGIHSAMNHDLIMDAHDEEKMRLDEQASQVAQRAAEALRKSRMIRSNESVSVPTWTGRSGAAGAPSSVRRKFGSTVNPRLLNNSKASNESPSSGSNKFNGYAAGTSSGKALSSAEILSKIRGNQEKAVSVGLEHQLGMSSTSTNHSRDVRTSRAPENSSGFQPEVMIRKICSFFQQKGGSCSSSSIVQYFKDRIPSKDLALFKNMLKEIATLQKGSNGSYWVLRPEYQE 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 339 353 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 1057 1087 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 299 318 - -
Vivi1018g00018 1216 PANTHER SNF2/RAD54 FAMILY MEMBER 162 1198 - -
Vivi1018g00018 1216 Coils Coil 116 143 - -
Vivi1018g00018 1216 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 400 599 IPR014001 -
Vivi1018g00018 1216 FunFam DNA excision repair protein ERCC-6 656 934 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 82 113 - -
Vivi1018g00018 1216 Gene3D - 655 944 IPR027417 -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 928 974 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 93 108 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 264 357 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 475 504 - -
Vivi1018g00018 1216 CDD SF2_C_SNF 731 856 - -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 959 973 - -
Vivi1018g00018 1216 FunFam Protein CHROMATIN REMODELING 8 366 648 - -
Vivi1018g00018 1216 Pfam SNF2-related domain 391 713 IPR000330 GO:0005524|GO:0140658
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 1124 1146 - -
Vivi1018g00018 1216 Gene3D - 361 648 IPR038718 -
Vivi1018g00018 1216 MobiDBLite consensus disorder prediction 1036 1087 - -
Vivi1018g00018 1216 Pfam Helicase conserved C-terminal domain 738 845 IPR001650 -
Vivi1018g00018 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 904 IPR027417 -
Vivi1018g00018 1216 CDD CSB_WHD 1149 1215 - -
Vivi1018g00018 1216 SMART helicmild6 762 845 IPR001650 -
Vivi1018g00018 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 649 IPR027417 -
Vivi1018g00018 1216 SMART ultradead3 384 607 IPR014001 -
Vivi1018g00018 1216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 736 895 IPR001650 -
Vivi1018g00018 1216 CDD DEXHc_ERCC6 388 598 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1018g00018 381 898 RAD5 or RAD16-like Gene Family AT1G02670 24.080 1.28e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1018g00018 SNF2_N 2.2e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1018g00018 K10841 - gmx:100820025 1863.2